Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01567 ATGAAAATGATTTCATCTGCCTCCAACGGAAACAAGACGAGGGAAATGGACGGCGACCTCGCCGGCCTCGGCTACAAAGTCCGTTCATCGGAGCTGTGTCAAGTGGCTCAAAACATGGAGCGTTTAGAGAACGTGATTTCATCCACTGACATATCTCAACTCGCGTCGGACACAGTCCTCTACGATCCCTCCAACATAGGGTTAGGTTCGTGGGTGGACACCCTCCTCTCCGAGTTGGACCAAACGGCGTCGTTACCGTTACACTACGATCTCTCGTCGGAGCTACCCGATTTGGCCACGGATCCAAACCAAAACCGCCAACTAGGGATGGTAACCACCGTGGAAGAGGACTCGGGGATAAGACTAGTTCACATGCTGATGACCTGTGCGGATTCCGTGCAACGTGGCGACCTCTCATTCGCCGGCTCCCTCATCGAGAACATGCAGGCGTTGTTGGCGCACGTGAACACCACCTGCGGCATCGGGAAAGTCGCCGGCTACTTCATCGACGCCTTGCGCCGCCGCGTATTGCCGCCTCTTCAAAGCAACGCGTTCGCGACGACGTCTCCGTACGAGAACGACGTTCTCTACCACCACTACTACGAGGTTTGCCCTTACTTGAAGTTCGCGCACTTCACCGCGAACCAGGCGATCCTGGAAGCGTTCAACGGCCACGATTGCGTCCACGTCATCGACTTCAACCTGATGCAGGGGCTCCAGTGGCCAGCGCTGATACAGGCCCTGGCGCTCCGGCTCCGGCCGGGAGGACCGCCGCTGCTCAGGCTCACCGGCGTCGGGCCTCCCTCGGCGGGCGACCGCGACACGCTCCGCGAGATCGGAGTTAGACTCGCCGAGCTGGCGCGCTCAGTGAACGTGCGGTTCGCGTTCCGCGGCGTGGCGGCGTGGCGGCTCGAGGACGTGAAGCCGTGGATGTTACAAGTGAGTCCGAACGAAGCAGTGGCGGTGAACTCGATCATGCAGCTGCACCGGCTTCTCGACCCGGCGAGTTCCACCGTGGAAGAGGTTCTTCGTTGGATCCGGAGTTTGAACCCTAAAATCGTAACGGTTGTGGAACAAGAAGCCAACCACAACGGTGAAGGGTTTTTGGAGCGGTTCACGGAGGCTTTGCATTACTACTCCACCGTTTTCGACTCGCTCGACGCGTGTCCGGTCGAACCGAACAAGGCTTTCGCGGAGATGTACTTACAGAGGGAGATATGCAACGTTGTGTGCTGCGAAGGACCGGCGCGAGTCGAGCGCCACGAGCCGCTCGCTACGTGGAGGGACCGGCTCGGGAAAGCCGGCTTCAGGCCCTTGCATTTGGGTTTCAACGCCTACAAGCAAGCCAGCATGTTGTTGACTCTCTTCTCAGCCGAGGGTTTCTGCGTCGAAGAGAATCAAGGGTGTTTGACTCTGGGTTGGCATAGCCGTCCTCTAATTGCGGCTTCGGCTTGGCAAGCCGCGCCACTGAGAGACGACGAAACGCTGCGTTTCGAGCATTGA 1503 0.5868 MKMISSASNGNKTREMDGDLAGLGYKVRSSELCQVAQNMERLENVISSTDISQLASDTVLYDPSNIGLGSWVDTLLSELDQTASLPLHYDLSSELPDLATDPNQNRQLGMVTTVEEDSGIRLVHMLMTCADSVQRGDLSFAGSLIENMQALLAHVNTTCGIGKVAGYFIDALRRRVLPPLQSNAFATTSPYENDVLYHHYYEVCPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRLRPGGPPLLRLTGVGPPSAGDRDTLREIGVRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSPNEAVAVNSIMQLHRLLDPASSTVEEVLRWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLDACPVEPNKAFAEMYLQREICNVVCCEGPARVERHEPLATWRDRLGKAGFRPLHLGFNAYKQASMLLTLFSAEGFCVEENQGCLTLGWHSRPLIAASAWQAAPLRDDETLRFEH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01567 500 Gene3D - 15 79 IPR038088 -
Pumo3g01567 500 SMART DELLA_2 17 89 - -
Pumo3g01567 500 Pfam Transcriptional regulator DELLA protein N terminal 17 83 IPR021914 -
Pumo3g01567 500 ProSiteProfiles GRAS family profile. 113 486 IPR005202 -
Pumo3g01567 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 101 482 IPR005202 -
Pumo3g01567 500 Pfam GRAS domain family 122 486 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01567 Pumo-Chr3 24135643 24138024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01567 3 486 GRAS Transcription Factor Family AT1G14920 47.637 8.16e-156 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo3g01567 GRAS 2.4e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01567 K14494 - gmx:100803245 832.787