Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01566 ATGATGCTTACATTGGCTTTATATCACTGGCTGCAGGATGAAATTTCAAGCCCTCTTAGTGCTCGAATTTTCGAACTTTGTAACACTGATTTTTTCCCAGAGGCTTTGCCAAATTCTGAGGTTACTTCCAGCTCAAACTGTTGCTATGAGGAGAACTCCTCATATGCCACAACAAACATATCTGTAACTATAGATGCAGAAAATAAGTTGAATAGCAATAGCAACACAGTCACCACCCCAACAAGCACTACCACCACCAACAACAACACAACCAACAGTAGTAACCTGTCTATTATCTTTGACTCCCAAGAAGAAATTGACAATGACATCTCTGCCTCCATAGACTTCACACTATCTCCATCTTTCAATGTTCCCCCATTTCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTCTGTGCAGCATCAGGTCCAACTAGCAGCATGTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACTGACTCTGTTGGACCTCCTCTTATGGGGGCTCCATTACCTTCTGTTTTTGAAGAGGACTGCATATCTTCTGTCCCTTCTTATATGCCTCTTAACCCCTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCATACATGCCTCCTGGCCCCCTTACTACTGCCTTGTCAACTGATAGTTCTGGAATATTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGGCACTTGGTACTGAGAGTCAGCAACTAGTACCCGGGGCTGGTAGTTCTGCCACTCTAACACCAGAAATCTCAAACTTAGAGGACTCCTCCTTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTCGGAGAGACCAATAGAACTACTAGTAGCAATCATGAAGAAGATGATGAAGAAGAAGTAGTTGTGAAAGATGAAGAAGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1218 0.4278 MMLTLALYHWLQDEISSPLSARIFELCNTDFFPEALPNSEVTSSSNCCYEENSSYATTNISVTIDAENKLNSNSNTVTTPTSTTTTNNNTTNSSNLSIIFDSQEEIDNDISASIDFTLSPSFNVPPFLPVTSQQEQFDFSSVQHQVQLAACSVVEGFSQYPTDSVGPPLMGAPLPSVFEEDCISSVPSYMPLNPSSPCTYLSPGMPPYMPPGPLTTALSTDSSGIFGGNILLGSELQTQELEYQGENGRMYCTDSIQRVFNPPDLQALGTESQQLVPGAGSSATLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEEDDEEEVVVKDEEDMVDSSDIFAHISGVNSFKCNYSIQSWI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01566 405 MobiDBLite consensus disorder prediction 342 364 - -
Pumo3g01566 405 ProSiteProfiles CCT domain profile. 307 349 IPR010402 GO:0005515
Pumo3g01566 405 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 43 368 IPR045281 GO:0009909
Pumo3g01566 405 MobiDBLite consensus disorder prediction 342 372 - -
Pumo3g01566 405 Pfam CCT motif 307 349 IPR010402 GO:0005515
Pumo3g01566 405 MobiDBLite consensus disorder prediction 71 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01566 Pumo-Chr3 24133201 24135582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01566 277 356 C2C2-CO-like Transcription Factor Family AT5G24930 37.647 1.80e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo3g01566 CCT 3.4e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01566 - - gmx:100813806 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01566 3 24133201 24135582 Pumo3g01566 3 24133201 24135582 ECH