Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01538 ATGGCAGGAAACATGGGGTGGGGTGTGATAGAAGAGGAGGGATGGAGGAAGGGACCTTGGACTGCTGAGGAGGACAGATTGCTCATTCAGTATGTCAACTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAAAGCATAATTCAAGAGCTTCATGCTAGGTGGGGAAACAGGTGGTCCACAATTGCAAGAAGCTTGCCAGGAAGAACTGATAATGAGATAAAGAACTATTGGAGGACCCATTTCAAGAAAAAGACTAAAAGCCACTCTGATGCTGCTGAGAAGGCTAAGGCTAGAGTCCGTTCCTCAAGGAAGCAGCAATTTCAACAGCAACAACTGCAATTGAAGCAGCAGCAGGTCCAGCAGCAGCAACAACAACAACAATTCCAATTCAACTTGGACATGAGATTGATCATAAACTTGCTTGAGGAAAATGACCATAGAGTCCCTTTTATATCTCAAGAGGCACAAGAAATGGTCAACATGTACCCAAACACTTCAGAACAGCAGGGCTACTTTTACTCTATGTTCAATGCCAATGACAATGTCTCTGCACCTGAGTCCTCAAACGAAGAAACTCTGTGGGATGGGCTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATTCAGCTTGTGCCACAACCACAAGCAAAGCTAGTTTACACAATTTAGTTGCTCCTTTCTGTTAA 789 0.4461 MAGNMGWGVIEEEGWRKGPWTAEEDRLLIQYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSHSDAAEKAKARVRSSRKQQFQQQQLQLKQQQVQQQQQQQQFQFNLDMRLIINLLEENDHRVPFISQEAQEMVNMYPNTSEQQGYFYSMFNANDNVSAPESSNEETLWDGLWNLDDVLCNFNSACATTTSKASLHNLVAPFC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01538 262 CDD SANT 74 115 IPR001005 -
Pumo3g01538 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Pumo3g01538 262 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Pumo3g01538 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 228 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo3g01538 262 SMART sant 69 117 IPR001005 -
Pumo3g01538 262 SMART sant 16 66 IPR001005 -
Pumo3g01538 262 FunFam Myb transcription factor 17 69 - -
Pumo3g01538 262 Coils Coil 139 161 - -
Pumo3g01538 262 Gene3D - 74 118 - -
Pumo3g01538 262 CDD SANT 19 64 IPR001005 -
Pumo3g01538 262 Gene3D - 17 69 - -
Pumo3g01538 262 FunFam MYB-related transcription factor 74 118 - -
Pumo3g01538 262 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pumo3g01538 262 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Pumo3g01538 262 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Pumo3g01538 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Pumo3g01538 262 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01538 Pumo-Chr3 23870829 23872010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01538 12 262 MYB Transcription Factor Family AT3G24310 57.034 2.75e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g01538 Myb_DNA-binding 8.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01538 K09422 - gmx:100782089 430.639