Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01533 ATGGAGCAGGAAGAGCACGAAGTCTACGGTGCTGACATTCCCGATGAGGAGGTTGATATGGACGCAGACGCAGACGCCGAACAAGATGAACAACTTCCCTCCAATCACACTACCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTTCGCGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCTGGCACTTCTGCGACTCAAGCTGAAAAGGAAGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACGCCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACAATACTGACAGACAAATTCGGTCAACCAAAAGGGTTTGCTTACGTAGAGTTTGTTGAGATCGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCACGGCCGACAACTGAAGGTGTCTGCCAAACGTACAAATGTTCCTGGAATGAAGCAGTATTATGGAAGAAGACCAGCTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTCCATTCTTTCCACCATATGGTTATGGAAGGGTTCCGAGGTATAGAAGACCCACTCGATACAGGCCATACTAG 648 0.4784 MEQEEHEVYGADIPDEEVDMDADADAEQDEQLPSNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGTSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPAGFRSRRPFMPAPFFPPYGYGRVPRYRRPTRYRPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01533 215 SMART rrm1_1 92 163 IPR000504 GO:0003723
Pumo3g01533 215 MobiDBLite consensus disorder prediction 29 45 - -
Pumo3g01533 215 MobiDBLite consensus disorder prediction 67 87 - -
Pumo3g01533 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 23 191 - -
Pumo3g01533 215 SUPERFAMILY RNA-binding domain, RBD 81 188 IPR035979 GO:0003676
Pumo3g01533 215 Gene3D - 11 173 IPR012677 -
Pumo3g01533 215 CDD RRM_II_PABPs 92 163 - -
Pumo3g01533 215 Coils Coil 34 68 - -
Pumo3g01533 215 FunFam Polyadenylate-binding protein 1 85 171 - -
Pumo3g01533 215 MobiDBLite consensus disorder prediction 1 45 - -
Pumo3g01533 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 167 IPR000504 GO:0003723
Pumo3g01533 215 MobiDBLite consensus disorder prediction 1 28 - -
Pumo3g01533 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01533 Pumo-Chr3 23838077 23845600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01533 92 163 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.01e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01533 K14396 - gmx:100527545 347.436