Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01528 ATGTCGGATGCACCAACGAGCCCGAGTCATGAGAGTGGGGGCGAGCAGAGTCCGCGTGGTTCGTCCTCCGGTGCGAGGGAGCAGGACCGCTACCTTCCCATTGCCAACATCAGCCGCATCATGAAGAAGGCGTTGCCTTCCAATGGCAAGATTGCAAAGGACTCGAAAGATACTATGCAAGAATGCGTTTCCGAATTCATCAGCTTCATTACCAGCGAGGCGAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACAATCAATGGAGACGATTTGCTATGGGCGATGGCCACTTTAGGATTTGAAGACTACATAGAGCCGCTTAAGGTGTACCTGGCAAGGTACAGAGAGGCGGAGGGTGACACTAAAGGATCTGCTAGAAGTGGTGATGGATCTTCTAGACCAGATCAAGTTGGCCTTGCAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCGCTGAACTATGTTGGTTTGCAGGTAATACTCTTTCTTTCCGTGTCTCTTGAATGCATGAATGCTCAAATTATTTTTTTAACAAACACATGCAAGCTCAATTATGGAGAAAAAAAAATAAAGTTAAGTGACACTCTTAGTAAAAATAGCTAA 603 0.461 MSDAPTSPSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKALPSNGKIAKDSKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREAEGDTKGSARSGDGSSRPDQVGLAGQNAQLVHQGSLNYVGLQVILFLSVSLECMNAQIIFLTNTCKLNYGEKKIKLSDTLSKNS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01528 200 Gene3D Histone, subunit A 18 152 IPR009072 GO:0046982
Pumo3g01528 200 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Pumo3g01528 200 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pumo3g01528 200 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pumo3g01528 200 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pumo3g01528 200 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo3g01528 200 MobiDBLite consensus disorder prediction 1 30 - -
Pumo3g01528 200 SUPERFAMILY Histone-fold 28 142 IPR009072 GO:0046982
Pumo3g01528 200 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo3g01528 200 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
Pumo3g01528 200 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01528 Pumo-Chr3 23750081 23753026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01528 9 150 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.524 2.26e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo3g01528 CBFD_NFYB_HMF 5.8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01528 K08065 - gmx:100779577 306.605