Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01509 ATGGCAACAGGATCAAAGTTTTTGGACAATGCAATTATAAGAGGCCATTCTCACTCTCTCACTGCCTCTAATCATCCTCATGTATTAAGAAGTGGGGCAAACTCATCAATAGCATCATCACCTGAAAAGCTTCTTTCATGTTCAAATTCTACTTCAATGAAAGAAGAGGCACCTTTAGCCACTTGGATTAGTCATATCCCTGCAAAGTTCAATGGCCATGAAGACCTCAAGAATGGCAAAGAGAAAAACCAATCCAATTCTATCTTCCCAGCCTCAGACATAAAAAACAGCTCCATTCCTCTAAATCTTTTGGAAACTCTCCCACCATTAACTATAGCACCATGTTTAGATGAGCCAGTGGCTTCCTTAGCATCTTCTTCTGCCACACCAAAATTTCCAAACTTGACTTTGTTTTTGCAGGAACCCTCCATGGTGTACTCATCATCATCATCAAACATCAAAGGTGGTGAAGTCATGTCAGCAACTTCAGACCCCACATATCATGTGTCTCAGTTTGTCCAAAACCAGCATCAAGCAGGTAGTGATGCTGATGCACACAAAATGAACAAGAACCTAACAAATTCGCAGTCCAGGTCTTTCAATGAGAATTGGTTGAGTGCCACTAGGACTCAGCCTATGAAGAGTGGTGGAAGAGGCAAGCTGTTTAAAGGTGTGAGGCAGAGACACTGGGGGAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAACTTCCCAGATCTCAAGCATGTAATTCAGGCCAATTCTCTGAATGGAACCACTGCTGCACTTGTGGAGGCAAAACTACAAGCAATATCACAAGGTGGTTCTTCTCATAGGAAGCCAACTGATTCACCACCAGGGTCAAGCAATAAGCACAATGATGAGAGTGGCAAATTGAAAAGTATAAATGGCAAGGATTCAACCATGAAGGAGTGGCAGTTTGACATAGAGAGCAGGATTGGAGCTGAGATAACTGAGAGAAGCAAAAGTACACTCCACCATGAGATATCAGATGTGGAAGCTGTTCAGTTAAGTAGAATGCCCTCCCTAGACATGGACATCATTTGGGATGAACTTTTAGTCTCTAATTCATGA 1194 0.4255 MATGSKFLDNAIIRGHSHSLTASNHPHVLRSGANSSIASSPEKLLSCSNSTSMKEEAPLATWISHIPAKFNGHEDLKNGKEKNQSNSIFPASDIKNSSIPLNLLETLPPLTIAPCLDEPVASLASSSATPKFPNLTLFLQEPSMVYSSSSSNIKGGEVMSATSDPTYHVSQFVQNQHQAGSDADAHKMNKNLTNSQSRSFNENWLSATRTQPMKSGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGGSSHRKPTDSPPGSSNKHNDESGKLKSINGKDSTMKEWQFDIESRIGAEITERSKSTLHHEISDVEAVQLSRMPSLDMDIIWDELLVSNS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01509 397 ProSiteProfiles AP2/ERF domain profile. 221 278 IPR001471 GO:0003700|GO:0006355
Pumo3g01509 397 CDD AP2 220 280 IPR001471 GO:0003700|GO:0006355
Pumo3g01509 397 Gene3D AP2/ERF domain 221 279 IPR036955 GO:0003700|GO:0006355
Pumo3g01509 397 MobiDBLite consensus disorder prediction 304 337 - -
Pumo3g01509 397 Pfam AP2 domain 222 270 IPR001471 GO:0003700|GO:0006355
Pumo3g01509 397 FunFam Ethylene-responsive transcription factor 2 220 279 - -
Pumo3g01509 397 SUPERFAMILY DNA-binding domain 221 279 IPR016177 GO:0003677
Pumo3g01509 397 PRINTS Ethylene responsive element binding protein signature 244 260 IPR001471 GO:0003700|GO:0006355
Pumo3g01509 397 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700|GO:0006355
Pumo3g01509 397 SMART rav1_2 221 284 IPR001471 GO:0003700|GO:0006355
Pumo3g01509 397 MobiDBLite consensus disorder prediction 304 325 - -
Pumo3g01509 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 80 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01509 Pumo-Chr3 23542867 23544060 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01509 97 392 AP2-EREBP Transcription Factor Family AT4G13620 43.974 2.16e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g01509 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01509 - - gmx:100819431 679.863