Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01497 ATGGCCACAGCAGAAGAAATTTCAACTTTGAAATTCTTGCGCCAATATCTCTTGGGGGATATTTCAGACCCTTTTCTCACCAATCTCATTCCAGTAAAACTCGAAGACCCCTCATCAGAACTTGATATGGGTTCAAACTTCTCAGAACAAAGTACCAGCTTCTGCAAGTTCCTAGAATGCTTTGATTTTGAAGCAGACACAGAAGTGGCAGGTCTCACTTCTCATCACAAGGTCCAAAACTCCATTTCAACAAGTCCACCCCAGAATTCCAATTTGCCAGAAGAACCAATGGTGTCAGTGAAAAAGGAAGCAACATGTTGTTATGCAACAAGGCGTTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCAGAGATCAGAGACCCCAAAAGGAAAGGGAGCAGGGTGTGGCTTGGCACATTTGACACTGAGATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCAGAAAGCAGTATTGAATTTCCCTCTGGAGGCTGGAAAGTCTCATCCAGAGCCCAACAGTTATGGCAGGAAAAGGAGAAGAGAATACACAACAGCTGCCACAAGTTCAAATCATGTTATGTTGTGA 612 0.4477 MATAEEISTLKFLRQYLLGDISDPFLTNLIPVKLEDPSSELDMGSNFSEQSTSFCKFLECFDFEADTEVAGLTSHHKVQNSISTSPPQNSNLPEEPMVSVKKEATCCYATRRYRGVRRRPWGKFAAEIRDPKRKGSRVWLGTFDTEIDAAKAYDCAAFRMRGQKAVLNFPLEAGKSHPEPNSYGRKRRREYTTAATSSNHVML 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01497 203 SUPERFAMILY DNA-binding domain 112 172 IPR016177 GO:0003677
Pumo3g01497 203 MobiDBLite consensus disorder prediction 172 203 - -
Pumo3g01497 203 PANTHER DNA-BINDING DOMAIN 88 182 IPR044808 GO:0003700|GO:0009873
Pumo3g01497 203 MobiDBLite consensus disorder prediction 179 193 - -
Pumo3g01497 203 CDD AP2 120 170 IPR001471 GO:0003700|GO:0006355
Pumo3g01497 203 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Pumo3g01497 203 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Pumo3g01497 203 PRINTS Ethylene responsive element binding protein signature 152 172 IPR001471 GO:0003700|GO:0006355
Pumo3g01497 203 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
Pumo3g01497 203 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Pumo3g01497 203 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Pumo3g01497 203 FunFam Ethylene-responsive transcription factor 2 111 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01497 Pumo-Chr3 23444313 23445458 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01497 110 189 AP2-EREBP Transcription Factor Family AT5G07580 73.750 3.77e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g01497 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01497 - - gmx:100306125 360.147