Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01493 ATGCTCTTGAGATGTTCATTGTTGATCCTTTCTTCTCAGCGGATTGATTTTGCTCCTGAACTCTGGAAAAACCTGTATCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCAGAGGAGAGGCATAGGCTTATGATGCAAGTGATACCTGACTCTTCTGATTTGTCCTTTACAGCTGATTTTGATCAATTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCACATCAATTGGACAAGTTGCAAAAGCTGGAGCAGCTTTATGGAGAATCACTGGATGAGAACACACGGCTATACGCAAAATATTATAAAGATTGCATGAATTCTGATTCCACTTCAGGCAAGAAGGTGGCTCCTATGTTGCCTATTGCTGAGCCACCAATGACTCCTATGCATGAGTTGAGCCGGTCTGTTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCCGGGTTTTCTTCGACATCAAGATCTAAAGATGATGTAAATGAAACAATCAGCAGAGAGAATTCAACTTCCAGCAATTCAAAGATGGAGAAATCATCCATATGGGGTGCTAAGGAGAGCATCATTGAAGAGAATGAAGATGAGTCAGATTATGAGCTTGATGATGCTTCTGTGGATTCAGATAACAAAAACAATATTTTCTCGCCAGAAATGAAGATGGTCAAGGAAGAGGATATTGAGCCAAAGGCACCTCTATCGAACCAGAAGAATCAAATTCATTCTCCTGATATTTTCTCTCCTTTGGATTCCCCAAGAACTGTTCCAAATAATTCATCTACAAATCCTGATACAAACAGTAAAAGAGAACCCAAGTATCTTCGCTTACTGTCTACTCGTTTGAGGGACTCAACTATTTCTGACTCTCTATCTTTGGACATGAGCACAGATCATATTTTCAACCCTGATAACGAAGTAATGGTCTTGAAGAATACTCACAGGAAAAACAATAACCAAACACTAAGTATGAATCATGACAATGAGAATAGCCTAGGACTAAATGACAGTTCCCTTTGTGAAACTGATGAGGGAAATCAAAGCAGCATTTCGTTGCCAAAATTAGAGAAGCTGACGATTGGATCAAAACCACCCAAAGATTTTGTTTGCGCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCAGAACTGGAAACACAACGTGCCCCATCACGCGACAGCCTCTATCTGCAAATACATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAAAGAACAGAATCCTGAACTAGCGCAAGAATTCTCGAATGCTAACACGCCAAGGGGTTCTTCCTGTTCTCCATCTGCAAAAGAGTTCCCAATGCTCTCCACTGCACAAAGAACAACTGATTCACCAAGTCTTAAGAGCAAAGAAAATTATATTAGACAAAGGAGCAACAGATTTATGCGAGTTGCTGTTGCAACATCTCCAACTAGTGTGCTAACTCAAGCTGCAGTTGAAACAATTATGAATTCCTTGAAACCTTACATTTCAAGTCTCTGTACATCAGAAAACTTGCAAGAATGTGAAGAAGCTGTATTGGAAATAGCAAGATTATGGAAAGATTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAGCCAACTATCATAAGTGGTTTGGTGGAAATACTTGCAGCTTCTCTGAGTAGAGAAGTTTTAAGAACATCAATTTATATTCTTTCTGAGCTAATCTTTTTAGATGAAAGTGTTGGAGAAACGCTTAACAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTCAGTGCATGAACTTATCCCATCTCTTGTGCAAGTGATTCAGAACAAAAATGAGGGGTCAGATGATTTTCAGTTAGTTATAGACCCCAAGGATGCTGCCATAGCAATTCTTGAGCAAATTTTATTAGGAGGGGATGAACATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCTGAAAATGGAATTCCAGTGTTACTGAAGTATTTGGAGAGGATGGAGGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAGGTTGCAAGAGCTTGATAGCAAACAGAATTGAATTGTCTCCTGTGCTTGAATTATTTCACGCTGGAAATGATAGCGTGAGAGGCATCTGTGTGGAGTTTCTCTCAGAACTTGTTCAATTGAATAGAAGGACAGTCTGCAACCGGATATTACAGACAATCAAGGATGAAGGAGCATTTAGTACGATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAGCTTGCTGTTGCCAGTCTTCTTCTTCAAATTGATCTTCTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTTTGGATGCTTTACTATTTCTTATTGGACATGTAACTTTGTCGGGAAAGTCATATACTGAAGCTTGGTTGCTCAAGATTGCAGGATTTGATCAACCTTACAATGCTTTAATTAAGGCCGAGCAGTTGGGGCAGTATTACAATGATTCAGTGGAAACAATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTGCTTTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGTCACATGGCTCACACACATGCTCTCTGCTTTTCCTGATACTGGCATAAAGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATGTCCTGCAGTCATCCAAGAACCTGGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAAACTTTCATAAATGATCCAATTGCTCAAGAAGCACTTAGAGCTCATGCTAAAAGCATCTATAGAATCATGAGGAAGCTGAAGAAATATTCAACAGTTGCAGTTGATATTATGAAAGCCTTACTAAACTTAAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCAAGTGGAGAGGTGCTTTCTTTGCTTTATATGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAAGTATCAAGGTATGGGATGCAAGAAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATCTCTTTGTTCTTCAGATGATAGGCTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGACAGTCAAACCAGATGAGATTAGATGTATAGATGTTCATGACGTTAAGGAGCCAGTGTATGAGCTGACAGTCAATGCCAAATTGGCATGCTATGTATCTCAAGGAAGTGGAGTTAAGGCAAGCCTAATATGTTGCTTGAACATCTCAAATAGAAATTTAGTTCCCTCATAA 3558 0.3949 MLLRCSLLILSSQRIDFAPELWKNLYLPHMSSIVGWYSEERHRLMMQVIPDSSDLSFTADFDQFFNESLVFSMRPHQLDKLQKLEQLYGESLDENTRLYAKYYKDCMNSDSTSGKKVAPMLPIAEPPMTPMHELSRSVPDFVKFGPILPKSAGFSSTSRSKDDVNETISRENSTSSNSKMEKSSIWGAKESIIEENEDESDYELDDASVDSDNKNNIFSPEMKMVKEEDIEPKAPLSNQKNQIHSPDIFSPLDSPRTVPNNSSTNPDTNSKREPKYLRLLSTRLRDSTISDSLSLDMSTDHIFNPDNEVMVLKNTHRKNNNQTLSMNHDNENSLGLNDSSLCETDEGNQSSISLPKLEKLTIGSKPPKDFVCAITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANTLPKTNYVLKRLITSWKEQNPELAQEFSNANTPRGSSCSPSAKEFPMLSTAQRTTDSPSLKSKENYIRQRSNRFMRVAVATSPTSVLTQAAVETIMNSLKPYISSLCTSENLQECEEAVLEIARLWKDSKTDPQIHSYLSKPTIISGLVEILAASLSREVLRTSIYILSELIFLDESVGETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSVHELIPSLVQVIQNKNEGSDDFQLVIDPKDAAIAILEQILLGGDEHSRSLNALSVISENGIPVLLKYLERMEGRRSVVSILLCCMQAEKGCKSLIANRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTVCNRILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHVTLSGKSYTEAWLLKIAGFDQPYNALIKAEQLGQYYNDSVETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVTWLTHMLSAFPDTGIKDVARKSLLDELINVLQSSKNLEEKILATLALKTFINDPIAQEALRAHAKSIYRIMRKLKKYSTVAVDIMKALLNLNSVDVTELWSCKEVVELDLSSSGEVLSLLYMNGQVLSGHSDGSIKVWDARKRIPRVIQETHEHTKAVTSLCSSDDRLYSGSLDKTIRVWTVKPDEIRCIDVHDVKEPVYELTVNAKLACYVSQGSGVKASLICCLNISNRNLVPS 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01493 1185 ProSiteProfiles U-box domain profile. 365 440 IPR003613 GO:0004842|GO:0016567
Pumo3g01493 1185 SUPERFAMILY RING/U-box 365 438 - -
Pumo3g01493 1185 Pfam WD domain, G-beta repeat 1101 1129 IPR001680 GO:0005515
Pumo3g01493 1185 ProSiteProfiles Trp-Asp (WD) repeats profile. 1075 1088 IPR001680 GO:0005515
Pumo3g01493 1185 SMART Ubox_2 369 433 IPR003613 GO:0004842|GO:0016567
Pumo3g01493 1185 ProSiteProfiles Trp-Asp (WD) repeats profile. 1100 1132 IPR001680 GO:0005515
Pumo3g01493 1185 MobiDBLite consensus disorder prediction 196 275 - -
Pumo3g01493 1185 SUPERFAMILY WD40 repeat-like 1061 1135 IPR036322 GO:0005515
Pumo3g01493 1185 CDD RING-Ubox_PUB 367 419 IPR045210 -
Pumo3g01493 1185 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1100 1132 - -
Pumo3g01493 1185 MobiDBLite consensus disorder prediction 235 270 - -
Pumo3g01493 1185 MobiDBLite consensus disorder prediction 153 184 - -
Pumo3g01493 1185 Gene3D - 494 868 IPR011989 -
Pumo3g01493 1185 Gene3D - 1041 1182 IPR015943 GO:0005515
Pumo3g01493 1185 SMART WD40_4 1050 1088 IPR001680 GO:0005515
Pumo3g01493 1185 SMART WD40_4 1093 1130 IPR001680 GO:0005515
Pumo3g01493 1185 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1169 - -
Pumo3g01493 1185 Pfam U-box domain 367 437 IPR003613 GO:0004842|GO:0016567
Pumo3g01493 1185 SUPERFAMILY ARM repeat 477 1025 IPR016024 -
Pumo3g01493 1185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 448 IPR013083 -
Pumo3g01493 1185 MobiDBLite consensus disorder prediction 169 184 - -
Pumo3g01493 1185 Coils Coil 969 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01493 Pumo-Chr3 23383974 23389592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01493 357 437 U-box Gene Family AT1G49780 48.148 7.12e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01493 - - gmx:100776142 2091.23