Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01481 ATGAAGAGTTCAGAGGAGACTGTGCTATTGCTTGTGAGCTTTATTATTCTAGCCCTTATGGTTACATTCATCGCTTATGTGTGCTCTAGTAATATTCCACGCACTATTCCTTCTGTGCCTGTTGGTGCCACACACTCCAACAACCACACCACAATCACTGTGGAGCCACCTGAGCCACGCTTAGATCACACCAGTGTGCGAAGCTATCCTAGTTTCCAATTCTCCAAGGCCAAATTGTGTAGTAGCACTAGCAGTAGCTCTTCAAGTTGTTCCATATGCTTGATGGATTACAAAGAATGTGATTCATTGAGAGTGCTTCCTGCTTGTGGCCACTTCTTCCATGTCAAGTGTGTTGATCCTTGGTTGAGAATCAATTTGACCTGCCCAGTTTGTAGGACCCCAATAGTCCTCCAAGATGTATGTAAAAATTTGTAA 435 0.4368 MKSSEETVLLLVSFIILALMVTFIAYVCSSNIPRTIPSVPVGATHSNNHTTITVEPPEPRLDHTSVRSYPSFQFSKAKLCSSTSSSSSSCSICLMDYKECDSLRVLPACGHFFHVKCVDPWLRINLTCPVCRTPIVLQDVCKNL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01481 144 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 136 IPR045899 -
Pumo3g01481 144 SMART ring_2 90 131 IPR001841 -
Pumo3g01481 144 Pfam Ring finger domain 89 132 IPR001841 -
Pumo3g01481 144 SUPERFAMILY RING/U-box 83 138 - -
Pumo3g01481 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 140 IPR013083 -
Pumo3g01481 144 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01481 Pumo-Chr3 23316982 23317416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01481 59 133 C3H Transcription Factor Family AT2G35910 52.000 6.11e-22 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01481 - - gmx:102663850 251.906