Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01480 ATGAACAACAGCACCAACAACAAGGAAGACAATGGTTTTGATCCAAGTGGGTTCACATATGGGGTAGCCTTTGTTGTTGGCTTGATCTTCTTACTTCTCACGGTGGCTTTTGCATGTGTGCGTCTTCGCATGGCTCGTGGTCCTAACATGCTCAATATTTTGGCTGGTATTCCACCATCTCATCACACAAGATCAAGATCAGAAGAAGACTCAGCTGAACAAGGCCTTGGCCTTGGCCTTGGCCTTCATCACATTGACACAAGCTTTGAGAGCTATCCAAAGCTGCTTTACTCTCAAGTAGAGAAGAAGGGTTCAAGTTCAAGTGTTGTTTCTTCTAGCTGCTCCATCTGCTTAGGGGACTACAAAGAAAGTGACATGTTGAGGTTGCTTCCTCACTGTGACCATCTTTTCCACCTTGCTTGTGTTGATCCTTGGCTTAGGTTGCATTCAACTTGCCCCATATGTAGAAAATCATCATCTATTCAAGCTTCACATAGTGCCTCCAATTAA 510 0.4431 MNNSTNNKEDNGFDPSGFTYGVAFVVGLIFLLLTVAFACVRLRMARGPNMLNILAGIPPSHHTRSRSEEDSAEQGLGLGLGLHHIDTSFESYPKLLYSQVEKKGSSSSVVSSSCSICLGDYKESDMLRLLPHCDHLFHLACVDPWLRLHSTCPICRKSSSIQASHSASN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01480 169 Pfam Ring finger domain 113 156 IPR001841 -
Pumo3g01480 169 CDD RING-H2_EL5-like 116 156 - -
Pumo3g01480 169 SMART ring_2 114 155 IPR001841 -
Pumo3g01480 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 162 IPR045899 -
Pumo3g01480 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 162 IPR013083 -
Pumo3g01480 169 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Pumo3g01480 169 SUPERFAMILY RING/U-box 100 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01480 Pumo-Chr3 23314622 23315480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01480 17 158 C3H Transcription Factor Family AT5G06490 37.013 6.46e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01480 - - gmx:102663718 261.922