Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01478 ATGGGGTATCTGTATCTCTTGCTGCTTCTATGTTTTTCTACTTTGTTATGTGCTGCTTCTGCGTTGAACTCTGATGGGTTGGCTTTGTTGTCCCTCTTGAGGAACTGGACTATTGTGCCTAGTGACATAAACTCCACATGGAAGTTGTCTGATTCCACTCCATGCTCATGGGCAGGAGTGCAGTGTGATAATGCCAATAATGTGGTTTCTCTAAACCTCACTAGTTATTCAATTTTTGGTCAGTTAGGACCTGATCTTGGACGTTTGATTCACTTGCAAACCATAGACTTATCAAATAATGATCTCTTTGGAAAAATTCCCCCAGAATTAAACAACTGTAGCATGCTTGATTACTTGGACCTTTCTGTAAACAACGTTAGTGGAGGAATACCCGAGAGCTTCAGAAACTTGCAAAATTTGAAGCATATGGACATTTCATCTAATCTCCTTAATGGTGAAATTCCTGAATCCTTGTTTGAAATTTCTCCCTTGGAAAAACTGTATCTTAGCAACAACAGTTTAACTGGTTCCATTCCCTCGAGTATTGGGAATATCACTAAGCTTGTCACACTGGATCTTTCGTATAATCAGCTGTCAGGGACAATTCCCATGCCTATTGGAAATTGTAGTAAATTAGAGTATCTGTATCTGGAAAGGAATCAATTAGAGGGAGTTATTCCTGAGAGTCTAAATAATCTCAAAAATCTTCAGGAGTTATATCTCAATTATAATAATCTTGGAGGTACTGTTCAATTGGGATCTGCAAATTGCAAAAAATTATCTATTTTGAGTCTTTCTTTCAATAACTTCAGTGGGGGTATACCATCAAGCTTGGGGAATTGTAGTGGTCTTATAGAGTTTTATGCTGCGGGGAGTAACTTTGTTGGCAGTATACCATCAACCTTGGGCCTCCTGCCCAACCTTTCTATTCTAATCATTCCAGAGAACCTATTTTCTGGGAAAATACCTCCACAGATTGGTAATTGCAAATCACTGGAAGAGTTGCATTTGAATTCCAATGAACTTGAGGGAGAGATTCCAGCTGAACTGGGAAACTTGAGTAAATTACGTGATCTTAGATTGTATGAAAACCTTTTGACAGGAGAGATTCCACTTGGGATATGGAAAATTCAAAGCCTTGAGCATATCCTACTGTACAATAATAGCCTTTCAGATGAGCTACCTTTTGAGATGACAGAGCTAAAACATCTTAAGAATATCACATTGTTTACAAACCATTTCTCTGGAGCCATACCTCAAAGCTTAGGAATCAATAGCAGTTTGGTGGTGTTAGACTTAATGTATAATAATTTCACTGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGCAACTGGTCAGGCTGAATATGGGTGGCAATCAATTTTATGGCAGCATACCTCCTGATGTAGGAAGGTGTAGAACTCTTACAAGGTTGAGACTTGAAGATAATGAATTAACTGGGGCACTTCCTGATTTTGAAACTAATCCAAACCTCTCTTACATGAGCATCAACAACAACAATATAAGTGGAGAAATTCCATCGAGTTTGGGAAACTGCACAAATCTCTCTCTTTTAGATTTATCCATGAACAGCTTAATGGGTCTTGTACCCTCAGAGCTAGGAAACCTTGTGAATCTCCAGAGTTTGGATCTTTCTCACAATCACTTGGAAGGTCCTTTGCCACATCAACTGTCAAACTGTAACAAAATGATCAAGTTTGATGTTGGATTCAATCTCTTGAACGGTTCATTTCCATCAAGTTTCCAGAGCTGGACAGCATTAACAACTTTAATTCTCTCAGAGAATCATTTTAATGGCGGTATCCCAGCTTTCTTGTCAGAATTTAAAAAGCTCAACGAGTTACGACTTGGTGGAAATATGTTTGGAGGAAACATTCCTAAATCAATTGGAGAACTGGTGAATTTGTTATATGAGCTAAATCTAAGTGCTAATGGGCTGATGGGTGAGCTTCCTGGGGAGATTGGAAACCTGAAGAGTCTGCTAAGCCTGGATCTATCTTGGAACAATTTGACAGGAAATATACAAGTTCTTGATGAGCTCAGTTCATTATCTGAATTCAACCTCTCATATAATTCTTTCGAAGGTCCTGTGCCACAACAGCTAACAACGTTACCAAATTCTTCTTTATCATTTTTGGGCAATCCTGGCCTATGTGGCTCGAATGTCACTGAGAGCAGCTATTTAAGGCCATGTGACACAAATTCCAAAAAGTCAAAAAGGCTGAGTAAAGTTGCAACTGTGATGATAGCACTTGGATCCTCAATATTTGTTTTTCTGCTGATGGGGTTAATCTATATATTCTTTATCAGAAAAATTAAGCGGGAAGCCATAATCATTGAGGAAGATGATTCTCCAACCCTTCTCAATGAAGTGATGGAAGCTACAGAAAATCTAAATGATCAGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTTTACAAAGCAGCAGTAGGTCCAGACAAAATTTTGGCTGTAAAGAAGTTTGTATTTGCTCATGATGAAAGGAAAAGCTCAAGCATGACCAGAGAAATTCAAACCCTTGGAATGATTAGGCATCGAAATTTGGTCAAATTGGAAGGTTGCTGGTTGAGAGAAAACTATGGTCTAATTGCATACAAATACATGCCAAATGGAAGCCTTCATGATGCGTTGCATGAGAAGAATCCACCACACTCCTTTGAATGGAATGTCCGAAACAAGATAGCTCTTGGAATTGCACATGGATTGGCTTATCTCCATTATGACTGTGATCCTGTCATAGTGCACAGAGACATCAAAACAAGCAATATACTTCTAGATTCTGAGATGGAGCCTCATATTGCAGATTTTGGTATTGCCAAGCTTTTGGATCAGCCTTCTTCCTCAACACAGTCAACATCTGTTACTGGTACACTTGGTTATATAGCACCAGAGAAAGCTTATACAACAACAATGGGTAAGGAATCTGATGTATACAGTTATGGAGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGCCATTGGATCCATCATTTATTGAAGGAACGGATATAGTTCATTGGGCTAGATCTGTCTGGGAGGAAACGGGAGTTGCTGATGAAATTGTTGATCCAGAGCTTGCTGGTGAAATTTCAAATTCTGATGTGATGAAACATGTTACCAAGGTGCTTTTGGTGGCTTTGAGATGCACAGTAAAGGATCCACGCAAGAGACCTACGATGAGGGATGTTATCAAGCAATTGTAG 3249 0.3912 MGYLYLLLLLCFSTLLCAASALNSDGLALLSLLRNWTIVPSDINSTWKLSDSTPCSWAGVQCDNANNVVSLNLTSYSIFGQLGPDLGRLIHLQTIDLSNNDLFGKIPPELNNCSMLDYLDLSVNNVSGGIPESFRNLQNLKHMDISSNLLNGEIPESLFEISPLEKLYLSNNSLTGSIPSSIGNITKLVTLDLSYNQLSGTIPMPIGNCSKLEYLYLERNQLEGVIPESLNNLKNLQELYLNYNNLGGTVQLGSANCKKLSILSLSFNNFSGGIPSSLGNCSGLIEFYAAGSNFVGSIPSTLGLLPNLSILIIPENLFSGKIPPQIGNCKSLEELHLNSNELEGEIPAELGNLSKLRDLRLYENLLTGEIPLGIWKIQSLEHILLYNNSLSDELPFEMTELKHLKNITLFTNHFSGAIPQSLGINSSLVVLDLMYNNFTGTLPPNLCFGKQLVRLNMGGNQFYGSIPPDVGRCRTLTRLRLEDNELTGALPDFETNPNLSYMSINNNNISGEIPSSLGNCTNLSLLDLSMNSLMGLVPSELGNLVNLQSLDLSHNHLEGPLPHQLSNCNKMIKFDVGFNLLNGSFPSSFQSWTALTTLILSENHFNGGIPAFLSEFKKLNELRLGGNMFGGNIPKSIGELVNLLYELNLSANGLMGELPGEIGNLKSLLSLDLSWNNLTGNIQVLDELSSLSEFNLSYNSFEGPVPQQLTTLPNSSLSFLGNPGLCGSNVTESSYLRPCDTNSKKSKRLSKVATVMIALGSSIFVFLLMGLIYIFFIRKIKREAIIIEEDDSPTLLNEVMEATENLNDQYIIGRGAQGVVYKAAVGPDKILAVKKFVFAHDERKSSSMTREIQTLGMIRHRNLVKLEGCWLRENYGLIAYKYMPNGSLHDALHEKNPPHSFEWNVRNKIALGIAHGLAYLHYDCDPVIVHRDIKTSNILLDSEMEPHIADFGIAKLLDQPSSSTQSTSVTGTLGYIAPEKAYTTTMGKESDVYSYGVVLLELISRKKPLDPSFIEGTDIVHWARSVWEETGVADEIVDPELAGEISNSDVMKHVTKVLLVALRCTVKDPRKRPTMRDVIKQL 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01478 1082 Gene3D Transferase(Phosphotransferase) domain 1 883 1082 - -
Pumo3g01478 1082 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 409 736 - -
Pumo3g01478 1082 SMART LRR_sd22_2 137 160 - -
Pumo3g01478 1082 SMART LRR_sd22_2 353 382 - -
Pumo3g01478 1082 SMART LRR_sd22_2 161 187 - -
Pumo3g01478 1082 SMART LRR_sd22_2 665 690 - -
Pumo3g01478 1082 SMART LRR_sd22_2 544 570 - -
Pumo3g01478 1082 SMART LRR_sd22_2 233 265 - -
Pumo3g01478 1082 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 307 394 - -
Pumo3g01478 1082 Gene3D Ribonuclease Inhibitor 300 399 IPR032675 -
Pumo3g01478 1082 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Pumo3g01478 1082 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Pumo3g01478 1082 Pfam Leucine rich repeat 497 557 IPR001611 GO:0005515
Pumo3g01478 1082 SUPERFAMILY L domain-like 428 730 - -
Pumo3g01478 1082 Pfam Protein kinase domain 810 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01478 1082 SUPERFAMILY Protein kinase-like (PK-like) 795 1082 IPR011009 -
Pumo3g01478 1082 Gene3D Ribonuclease Inhibitor 22 299 IPR032675 -
Pumo3g01478 1082 FunFam Serine/threonine-protein kinase-like protein CCR4 883 1082 - -
Pumo3g01478 1082 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515
Pumo3g01478 1082 Gene3D Ribonuclease Inhibitor 400 735 IPR032675 -
Pumo3g01478 1082 ProSiteProfiles Leucine-rich repeat profile. 667 689 IPR001611 GO:0005515
Pumo3g01478 1082 ProSiteProfiles Protein kinase domain profile. 806 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01478 1082 ProSitePatterns Serine/Threonine protein kinases active-site signature. 928 940 IPR008271 GO:0004672|GO:0006468
Pumo3g01478 1082 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 455 1077 - -
Pumo3g01478 1082 SUPERFAMILY L domain-like 25 347 - -
Pumo3g01478 1082 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 21 181 - -
Pumo3g01478 1082 PRINTS Leucine-rich repeat signature 188 201 - -
Pumo3g01478 1082 PRINTS Leucine-rich repeat signature 544 557 - -
Pumo3g01478 1082 Gene3D Phosphorylase Kinase; domain 1 776 882 - -
Pumo3g01478 1082 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 182 306 - -
Pumo3g01478 1082 SMART LRR_typ_2 353 377 IPR003591 -
Pumo3g01478 1082 SMART LRR_typ_2 209 232 IPR003591 -
Pumo3g01478 1082 SMART LRR_typ_2 544 568 IPR003591 -
Pumo3g01478 1082 SMART LRR_typ_2 233 257 IPR003591 -
Pumo3g01478 1082 SMART LRR_typ_2 137 161 IPR003591 -
Pumo3g01478 1082 SMART LRR_typ_2 665 692 IPR003591 -
Pumo3g01478 1082 SMART LRR_typ_2 89 113 IPR003591 -
Pumo3g01478 1082 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 774 882 - -
Pumo3g01478 1082 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Pumo3g01478 1082 SUPERFAMILY L domain-like 345 443 - -
Pumo3g01478 1082 SMART serkin_6 806 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01478 Pumo-Chr3 23284482 23288436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01478 13 1082 Receptor kinase-like Gene Family AT1G73080 51.054 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo3g01478 Pkinase 8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01478 - - gmx:100817655 1818.13