LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01477	ATGGACCTCTCATCTAATCTACTGGATGGTGAAATTCCTGAGTCCTTGTTTGAAATTCCTCATCTAGAAGAAGTTTATCTTAGCAACAACAGTTTAAGTGGTTCCATTCCCTCAAGTATTGGGAATAACACTAAGCTTGACACGCTGGGTCTTGCTTATAATCAGCTGTCAGGGACAATTCCCATGTCCATTGGAAATTGCAGATCTAGAAATTGCAAAAAGTTACTTTATTTGGGTCTTTCTCACAATGCATTTAGTGGGGGTATACCATCAAGCTTGGGGAATTGTAGTGGTCTGATAGAGTTTCATGCTGCAGAGAGTAAATTAGTTGGCACTATACCATCAACCTTAGGCCTCCTGCACAAGCTTTCTATTCTAATGATTCCTGAGAACCTAATTTCTGGGAAAATACCTCCACAGATTGTTAATTGCAAATCACTGGAACAGTTGCATTTGAATTCCAATGAACTTGAGGGAGAAATTCCTATTGAACTGGGAAACTTGAGTAAATTACGTGATCTTAGATTGTATCTAAACCTTTTGACAGGAGAGATTCCACTTGGGATATGGAAAATTCAAAGCCTTGAGCATACCCATGTGTACGATAATAGCCTTTCAGGTGAGCTACCTTTTGAGATGACAGAGCTCAAACATCTTAAGAATATCACCTTGTTTAAAAACCATTTCTCTGGTGTCATACCTCAAAGCTTAGGAATCAATAGCAGTTTGGTGGTGTTAGACTTCATGTATAATAATTTCACAGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGCAACTGGTCAAGCTGAATATGGGTTGCAATAAATTTTACGGTAGCATACCTCCTGATGTAGGAAGGTGTACAACTCTTACAAGGTTAAGACTTGAACATAATAATTTCTCTGGGCCCCTTCCTGATTTTGAATTTAATCCAAATCTCTCACACATGAGCATCAACAACAACAGTATCAGTGGAGAAATTCCATCAAGTTTGGGAAACTGCACAAATCTCTCTCGTTTAGATTTATTCATGAACAGCTTGACAGGTCTTGTACCCACAAAGCTAGGAAACCTTGTTAATCTCCGGATTTTAAATGTTTCTCACAATAACTTGGAAGGTCCTTTGCCACATCAGCTGTCAAAATGTACCAAAATGATCAAGTTTGATGTTGGATTCAATTTCTTGAACGGTTCGTTTCCATCAAGTTTTCGGAGCTGGACAGCATTAACAACTTTAATTCTCTCAGAGAATCATTTTAATGGTGGTATCCCAGCTTTCTTGTCAGCATTTAAAGAGCTTGACGAGTTACAACTTGACGGAAATATGTTTGGAGGAAACATTCCTGAAACAATTGGAGAACTGATGAATTTGTTTTATGAGCTAAATCTAAGTGCTAATGGGCTGATAAGTTCATTATCTGAATTCAACATCTCATACAATTCTTTGGAAGGTCCTGTGCCACAACAGCTAACAAAGTTACCAAATTCTTCTTTATCATTTTTGGGCAATCCTGGCCTATGTGGCTCGAATTTCACTGAGAGCAGCTATTTAAGACCATGTGACACAAATTCAAAAAAGCTCAGCAAAGTTGCAACTGTGATGATAGCACTTGGACCCTCAATATTTGTTGTTCTGCTGCTGGGGTTAATTTATGTATTCTTTATCAGAAAAATTAAGCAGGAAGCCAAAATCAATGAGAAAGGTGATTCTTCAACCCTTCTCATTAAAGTGATGGAAGCTACAGAAAATCTAAATGATCAGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTTTACAAAGCAGCACTAGGTCCAGACAAAATTTTGGCAATAAAGAAGTTTGTATTTGCTCATGATGAAGGGAAAAGATCAAGCATGATCAGAGAGATTCAAACCCTTGGAAAGATTAGGCATCGAAATTTGGTGAAATTGGAAGGCTGCTGGTTGAGAGAAAACTACGGTCTAATTGCATACAAGTACATGCCAAATGGAAGCCTTCATGATGTTTTGCATGAGAAGAATCCACCACACTCCTTAGAATGGAATGTCCGGAATAAGATAGCTCTTGGAGTTGCTCATGGATTGGCTTATCTCCATAATGACTGTGATCCTGTCATAGTGCACAGAGACATCAAAACAAGCAATATACTTCTAGATTCTGAGATGGAGCCTCATATTGCAGATTTTGGTATTGCCAAGCTTTTGGATCAGCTTTCTTCCTCAACACAGTCAACATGTGTTTACTGCATCTTTATTTGTCAATCCTCCTATCCTAATAACATGTTTAAATGTTGGTCTGTGACAGAGAATGCTTATACAACAAGAAAGGGTAAAGAATCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGGCATTGGATCCATCATTTATGGAAGGAATGGATATAGTTAATTTGGCTAGATCTGTCTGGGAGGAAACGGGAGTTGTTGATGAAATTGTTGATCCAGAGCTGGCTGATGAAATTTCAAAATCTGATGTGATGAAACAAGTTACCAAGGTGCTTTTAGTGGCTTTGAGATGCACAGAAAAGGATCCACGTAAGAGACCTACGATGAGGGATGTTATCAAGCATTTGTAG	2622	0.3848	MDLSSNLLDGEIPESLFEIPHLEEVYLSNNSLSGSIPSSIGNNTKLDTLGLAYNQLSGTIPMSIGNCRSRNCKKLLYLGLSHNAFSGGIPSSLGNCSGLIEFHAAESKLVGTIPSTLGLLHKLSILMIPENLISGKIPPQIVNCKSLEQLHLNSNELEGEIPIELGNLSKLRDLRLYLNLLTGEIPLGIWKIQSLEHTHVYDNSLSGELPFEMTELKHLKNITLFKNHFSGVIPQSLGINSSLVVLDFMYNNFTGTLPPNLCFGKQLVKLNMGCNKFYGSIPPDVGRCTTLTRLRLEHNNFSGPLPDFEFNPNLSHMSINNNSISGEIPSSLGNCTNLSRLDLFMNSLTGLVPTKLGNLVNLRILNVSHNNLEGPLPHQLSKCTKMIKFDVGFNFLNGSFPSSFRSWTALTTLILSENHFNGGIPAFLSAFKELDELQLDGNMFGGNIPETIGELMNLFYELNLSANGLISSLSEFNISYNSLEGPVPQQLTKLPNSSLSFLGNPGLCGSNFTESSYLRPCDTNSKKLSKVATVMIALGPSIFVVLLLGLIYVFFIRKIKQEAKINEKGDSSTLLIKVMEATENLNDQYIIGRGAQGVVYKAALGPDKILAIKKFVFAHDEGKRSSMIREIQTLGKIRHRNLVKLEGCWLRENYGLIAYKYMPNGSLHDVLHEKNPPHSLEWNVRNKIALGVAHGLAYLHNDCDPVIVHRDIKTSNILLDSEMEPHIADFGIAKLLDQLSSSTQSTCVYCIFICQSSYPNNMFKCWSVTENAYTTRKGKESDVYSYGVVLLELISRKKALDPSFMEGMDIVNLARSVWEETGVVDEIVDPELADEISKSDVMKQVTKVLLVALRCTEKDPRKRPTMRDVIKHL	873

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01477	873	ProSiteProfiles	Protein kinase domain profile.	585	873	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g01477	873	SUPERFAMILY	L domain-like	2	109	-	-
	Pumo3g01477	873	Gene3D	Transferase(Phosphotransferase) domain 1	662	873	-	-
	Pumo3g01477	873	SMART	serkin_6	585	873	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g01477	873	Gene3D	Phosphorylase Kinase; domain 1	555	661	-	-
	Pumo3g01477	873	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	275	868	-	-
	Pumo3g01477	873	Gene3D	Ribonuclease Inhibitor	71	241	IPR032675	-
	Pumo3g01477	873	Gene3D	Ribonuclease Inhibitor	242	517	IPR032675	-
	Pumo3g01477	873	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	707	719	IPR008271	GO:0004672\|GO:0006468
	Pumo3g01477	873	FunFam	Leucine-rich repeat receptor-like protein kinase TDR	1	243	-	-
	Pumo3g01477	873	FunFam	LRR receptor-like serine/threonine-protein kinase RPK2	552	661	-	-
	Pumo3g01477	873	SUPERFAMILY	L domain-like	82	353	-	-
	Pumo3g01477	873	FunFam	LRR receptor-like serine/threonine-protein kinase GSO1	244	522	-	-
	Pumo3g01477	873	Pfam	Protein kinase domain	589	872	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g01477	873	Gene3D	Ribonuclease Inhibitor	1	70	IPR032675	-
	Pumo3g01477	873	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	662	873	-	-
	Pumo3g01477	873	SUPERFAMILY	Protein kinase-like (PK-like)	575	873	IPR011009	-
	Pumo3g01477	873	SUPERFAMILY	RNI-like	311	497	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01477	Pumo-Chr3	23280272	23283215	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01477	1	873	Receptor kinase-like Gene Family	AT1G17750	45.426	0.0	779

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Pumo3g01477		Pkinase	2.8e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01477	-		-	gmx:100802056	1318.52