Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01466 ATGTTTTCTAGGTTGATACATCCCCATGAAGGCCAGGAAGACATGCAGGGTGGTTCCAATCACGCCCACCTCGGAGACCCTTGTCTTGTTCTCACTTCTGATCCCAAACCTCGTCTTCGTTGGACCGCTGACCTTCACGAACGCTTTGTTGACGCTGTCACTCAACTTGGGGGTGCCAGTAAAGCCACTCCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGAAGAGGGATGCAAAGATGCTTCATATCTTCAAGAAAGCCCTGGTACTGATAACTCTTCTCCAAAGTTACCAGCTTCTGATGCAAACGAGGGTCATGAAGTCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGATACATGGGCATGCTTGAGCGAGCATGCAAGATGTTGGCCGATCAATTTATTGGGGACATAGTTATAGACACGGACAGCCAAAAATTTCTAGGTTTGGAAAGCAAAACATCCAGAAGTTCCCTAGTTGATCACGTTGGCTTTTTTCCCCCAGCGTGTACTGAGGTAGGTGGAATGCATGTTTCAGAAGTAGCACCTATTCTCCAGCCTCAAGGGGCTGACTGTTCCACTGAAAGTTGCCTAACATCACTTGAGAGTTTGGGAGGGTTGACACTAGAAGGATCTCCTGGTGGATCGAAGAAGAGGATGCTGAACTTGGATTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACTCAAGGAATCCATTTAGCCCAAGTTAATCCCCCAGGAATGACTAGGTACGGTATGTAG 915 0.4689 MFSRLIHPHEGQEDMQGGSNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSEEGCKDASYLQESPGTDNSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIVIDTDSQKFLGLESKTSRSSLVDHVGFFPPACTEVGGMHVSEVAPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLNLDSMVAPLIWSEANTRTQGIHLAQVNPPGMTRYGM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01466 304 MobiDBLite consensus disorder prediction 1 21 - -
Pumo3g01466 304 FunFam Myb family transcription factor 35 93 - -
Pumo3g01466 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Pumo3g01466 304 MobiDBLite consensus disorder prediction 90 128 - -
Pumo3g01466 304 MobiDBLite consensus disorder prediction 109 123 - -
Pumo3g01466 304 Gene3D - 35 93 - -
Pumo3g01466 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 249 IPR044848 GO:0003700
Pumo3g01466 304 Pfam Myb-like DNA-binding domain 39 89 IPR001005 -
Pumo3g01466 304 Pfam MYB-CC type transfactor, LHEQLE motif 131 176 IPR025756 -
Pumo3g01466 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Pumo3g01466 304 MobiDBLite consensus disorder prediction 90 104 - -
Pumo3g01466 304 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01466 Pumo-Chr3 23202310 23206262 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01466 17 248 G2-like Transcription Factor Family AT3G24120 49.398 5.37e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo3g01466 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01466 - - gmx:100779871 557.37