Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01456 ATGGAAGCACCAGAGGAACTCTCTTTGGGGGGGTCCAAAGATCACACCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATCCCCTTCTCCATCACCGCCAATTCTTCCACCGGAGAAGGAGAAATAGAAGAAGATTGCTACAATGTTGATGATGACAACAACAACATCAAAAATGAAGAAATTAATAACAACAACAACAACAACCATGACAACAACAATAACAACAGCTCTCCCACCACTTCTTCTGCAGGATTACAAGATAGCACAGATGAAGAGGAGGACATGGCGAATTGCCTCATCCTTCTAGCACAAGGACAATCCCGGGAATCCCCGAAACACGCCGAGGAAGATGCCGGCATGAACTACGCCAAGTACAGCAGTAGAAAATTCTTGGAAGCTGCTACCTTGGGGTCAAGCAGGGCAGGGTACTATGTCTATGAATGCAAGACATGTAACAGAACCTTCCCTTCATTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCATTGATGGCCATTGGCCAAGAGAAGAAGCAACAACTCCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAAGTCACCATTTTCCCTTCAATTGAACACAAAGGGGAATTTGTACAGCAGCAACAACAACAAGTCCAAGGTGCATGAGTGCTCCATCTGTGGTGCTGAATTCACATCAGGACAAGCATTGGGAGGCCACATGAGACGCCACCGTGCACCGGTTGGAACCACCGCCACCGCCACCACCACCACACTCTCCTTCACCCCATTGGCTTTGGAACCAGAAGAAGATCATCCCAGAAAGAAAAGGAATGTGTTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCAGAAGATGATCATAGAGAATCCAAGTTTGCCTTTGCATCCAAGCAACAACAACAACATGGACAGAAACAACAACAACAACAACAGCAGCAGCAGCAACAACAACAAACAAGTCTTGTCTTCCCCGCACCAGCTTTGGTGGATTGTCATTACTGA 1050 0.4657 MEAPEELSLGGSKDHTNIVKGKRTKRVRPQSPIPFSITANSSTGEGEIEEDCYNVDDDNNNIKNEEINNNNNNNHDNNNNNSSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHAEEDAGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALMAIGQEKKQQLLLSSDEEEFQLKTNKSPFSLQLNTKGNLYSSNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTTATATTTTLSFTPLALEPEEDHPRKKRNVLNLDLDLNLPAPEDDHRESKFAFASKQQQQHGQKQQQQQQQQQQQQQTSLVFPAPALVDCHY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01456 349 MobiDBLite consensus disorder prediction 64 92 - -
Pumo3g01456 349 Gene3D Classic Zinc Finger 130 210 - -
Pumo3g01456 349 Gene3D Classic Zinc Finger 211 268 - -
Pumo3g01456 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 252 IPR013087 -
Pumo3g01456 349 MobiDBLite consensus disorder prediction 310 335 - -
Pumo3g01456 349 PANTHER ZINC FINGER PROTEIN ZAT5 83 323 - -
Pumo3g01456 349 MobiDBLite consensus disorder prediction 257 271 - -
Pumo3g01456 349 MobiDBLite consensus disorder prediction 31 47 - -
Pumo3g01456 349 MobiDBLite consensus disorder prediction 1 97 - -
Pumo3g01456 349 SUPERFAMILY beta-beta-alpha zinc fingers 151 252 IPR036236 -
Pumo3g01456 349 Pfam C2H2-type zinc finger 151 177 - -
Pumo3g01456 349 Pfam C2H2-type zinc finger 229 255 - -
Pumo3g01456 349 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Pumo3g01456 349 SMART c2h2final6 230 252 IPR013087 -
Pumo3g01456 349 SMART c2h2final6 152 174 IPR013087 -
Pumo3g01456 349 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Pumo3g01456 349 MobiDBLite consensus disorder prediction 255 335 - -
Pumo3g01456 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Pumo3g01456 349 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01456 Pumo-Chr3 22989369 22990605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01456 1 349 C2H2 Transcription Factor Family AT5G04390 45.576 1.93e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01456 zf-C2H2_6 6.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01456 - - gmx:100799383 516.153