Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01451 ATGGGTCGCGAGACTCTGTGCCTTCCAACCCCACCACCAACCACTGCTACCACCACAGTAGTGAAACCAGTGCCGCCATCACCACCTGCACCTGCACCACCTACCTCTCTTGCTCCTGGCTTCAGGTTCCACCCAACTGATGAGGAGCTTGTTATTTACTACCTCAAGCGCAAGTTCTCTGGCAAAAACTTCCGATTTGATGCCATATCCGAGGTTGACATATACAGGAGCGAGCCCTGGGACCTAGCAGATAAGTCAAGGTTGAAGACCAGGGACCAGGAGTGGTATTTTTTCAGTGCATTGGACAAGAAATATGGGAATGGTGGGAGGATGAACAGGGCTACAAGCAAAGGGTATTGGAAAGCCACTGGGAATGATCGACCAGTGAAGCATGACCAAAGGACTGTGGGGTTGAAGAAAACGTTGGTGTTTCATAGTGGCAGAGCTCCTGATGGGAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTGCCGAAGAGGAGCTAAAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCGTATGTTTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAACGGGCAACGGTATGCACCCTTCATTGAAGAAGAGTGGGATGACGCAACGGGAATGGTTCCAGGGGCAGACCCTGTGGATAACGGCTGTATTGCCCACCAACCACGTGTTGAAGGCAACGGTGGTGTTTTATGCATTGAAGGGAGAAATGGTGTTGTACAGGACACTCAATCTATCAACAAACCTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAAAGCATGGCTGAGTATCCATCACCTGAAAAGGATGATAATAATTGTAAGCACATGGATGACTACCCTTCACCTCAAACAGATAATCCAAAGCCTTTCTCTCAAATATACAAACGAAGGCGGTATAACTTGAACTCCAACAACTCTAATGTTTCTGGAGATTCAATTCGAACCAGCCAGGATCCGTGCTCCTCTACAATAACTACCGCTGCAACTGCACTCCCAACTGCCACTGCTGTCGCCACAACCACCAACACTGCACCGAAAAAACATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCTAGAATCCCTTGAATCAAAGGAAAGCCTTACTTCAATTAAGGCACCAGATTTTGACACCGAATATCTTGAGGCATCCATTCCTCCAAGCTGCGCAAAGTTCATCAAGAACTTGCAGAGTGAGATGCAGAAGCTTACAGTTGAAAAGGAGACGATGAGGTTTGAGATGATGAGCGCACAAGCGATGATTAACATTCTCCAGTCTCGCGTCGATGTTCTCAGCAAAGAAAATGAGGATTTGAAGAGGATGGTGGCCCAAAATCCTTAG 1407 0.4733 MGRETLCLPTPPPTTATTTVVKPVPPSPPAPAPPTSLAPGFRFHPTDEELVIYYLKRKFSGKNFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLAEEELKRAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDATGMVPGADPVDNGCIAHQPRVEGNGGVLCIEGRNGVVQDTQSINKPPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKHMDDYPSPQTDNPKPFSQIYKRRRYNLNSNNSNVSGDSIRTSQDPCSSTITTAATALPTATAVATTTNTAPKKHFLSALVEFSLLESLESKESLTSIKAPDFDTEYLEASIPPSCAKFIKNLQSEMQKLTVEKETMRFEMMSAQAMINILQSRVDVLSKENEDLKRMVAQNP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01451 468 Coils Coil 443 463 - -
Pumo3g01451 468 FunFam Nac domain-containing protein 86 46 194 - -
Pumo3g01451 468 Pfam No apical meristem (NAM) protein 39 164 IPR003441 GO:0003677|GO:0006355
Pumo3g01451 468 MobiDBLite consensus disorder prediction 16 38 - -
Pumo3g01451 468 Coils Coil 415 435 - -
Pumo3g01451 468 MobiDBLite consensus disorder prediction 283 310 - -
Pumo3g01451 468 SUPERFAMILY NAC domain 33 192 IPR036093 GO:0003677|GO:0006355
Pumo3g01451 468 ProSiteProfiles NAC domain profile. 37 191 IPR003441 GO:0003677|GO:0006355
Pumo3g01451 468 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 36 325 - -
Pumo3g01451 468 MobiDBLite consensus disorder prediction 283 298 - -
Pumo3g01451 468 Gene3D NAC domain 46 194 IPR036093 GO:0003677|GO:0006355
Pumo3g01451 468 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01451 Pumo-Chr3 22917310 22925340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01451 1 462 NAC Transcription Factor Family AT3G10480 41.802 2.05e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo3g01451 NAM 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01451 - - gmx:100808783 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01451 3 22917310 22925340 Pumo3g01451 3 22917310 22925340 ECH