Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01450 ATGGCACGGATGGGTCCAGGGTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTCAAGCGGAAGATGACGGGAAACCTCTCCCGGTACGATCACATCGCCGTCGTCGACGTCTACAAGCTCGAGCCCTGGGAGCTTCCCCCTCTGTCGAGGCTCAAGACGAAGGATTTGGAATGGTACTTCTTCAGTGCGCTGGACCGCAAGTACGGAAACGGGTCCAGGAAGAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACCGGAAAAGATCGCCCCGTCACCCACGACGGCCGCACCGTCGGAATGAAGAAGACGCTGGTTTACCACAACGGCCGGGCCCCACGCGGCCGTCGCAGCAACTGGGTCATGCACGAGTATAAGATGCTGGATGAAGAATTGGCACTTGCCGGGACAGTGCTGGATGTGTTTGTGGTGTGTAGGATTTTCGAGAAGAGCGGTGCTGGGCCCAAGAATGGGGCCAAGTATGGTGCTCCCTTGGACGAGAAGGAGTGGGATGAGGAGGAGGAGAATGAGCAGAAGGTGGATCTCTTGCCAGCGGCTGCTCCTAATGCTGTGGCTCTGTTGCCGGCGGTTCCTCTTAATGTGGTGGCTCCTCCTTCCTTGTCGATTACTGGTGGTGAGGTTTTGAATACTGTGCCTGCTGGGGACTATGTTGAAATCAACGACCTTGACATGGAGTTTGATTGGGATAATATGTTTGGGAGTGATACTTTTCCATCATTGAACTTTCATCATGGGGAGTGTAGTAACCATGCTGAGTATTCCAAAGTATTCATCAAGGATCAGGAGCCATTGGCAGGCACTTTTGGAATTTCTTGGCCTGAAACTGACTGGCCTCTTGATATGGCTGAGCATCATGGTGTGGGTACAAATTCAGGGAACGATGGAGACAATGGTGAGCTGAGCAATGTTGGCAATCTTCTGAATTTCAATGATGCATCAAATGATATGGATCAGGATCTGTACTGGGATGCCATTGAGAATCTTCCGACGGTTGATGATGGATTCATGGAATTACATGATATTGCGATTGCGAATGAGGGTAATCCTACTGAGGCTGATCCTTCTGTGAATGCTATGCTAGACGAGTATCCTGCACTCACTGATGATGATATTTTCAAGTATATATCTTTTGATACTCAGATTCCAGAGAGTGAAAACCTCATTCCCAACCAAGGATCACCTTTCACCCAGCAGAATGTGGAGGGAGAAACCGCTGATAAAGCTGTGGTTAATGAACATGATTCTGAAACACAGGAGGCAAAGTTAGCACCAGGAAATACAAATCCACTTGTGAAGCAAGCCTATGGATGGTTAGCCAGCATACCTGCTGCACCTGCACATGCTATGGAGTATCCTGCTAAGGATATTGCTCTTGGGCTTCATCCTGTTGCTCAGTCTTCCCATCCAGCTCATATAACTACAGGTATGATCAGCATAACAGACATTACTTTTAGAGGCAATGCGATGGATTGGACGATGGGCAAAAATGGAGGGTTTAACACTGTAATATCCACTGGGTTTTCTCAACCTGATGTTATGCCTGTCTCTGGCAAGACTGCATTTGTGTTGTCACATGGCTGGATTTTCCTGACTGGTTTCTCAGTTCTTATTCTTTCACTGAGTTTCAAGATTGGAAGCATCATGTATACTGGTAAATGA 1692 0.4882 MARMGPGFRFHPTDEELVVFYLKRKMTGNLSRYDHIAVVDVYKLEPWELPPLSRLKTKDLEWYFFSALDRKYGNGSRKNRATEKGYWKTTGKDRPVTHDGRTVGMKKTLVYHNGRAPRGRRSNWVMHEYKMLDEELALAGTVLDVFVVCRIFEKSGAGPKNGAKYGAPLDEKEWDEEEENEQKVDLLPAAAPNAVALLPAVPLNVVAPPSLSITGGEVLNTVPAGDYVEINDLDMEFDWDNMFGSDTFPSLNFHHGECSNHAEYSKVFIKDQEPLAGTFGISWPETDWPLDMAEHHGVGTNSGNDGDNGELSNVGNLLNFNDASNDMDQDLYWDAIENLPTVDDGFMELHDIAIANEGNPTEADPSVNAMLDEYPALTDDDIFKYISFDTQIPESENLIPNQGSPFTQQNVEGETADKAVVNEHDSETQEAKLAPGNTNPLVKQAYGWLASIPAAPAHAMEYPAKDIALGLHPVAQSSHPAHITTGMISITDITFRGNAMDWTMGKNGGFNTVISTGFSQPDVMPVSGKTAFVLSHGWIFLTGFSVLILSLSFKIGSIMYTGK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01450 563 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Pumo3g01450 563 FunFam Nac domain-containing protein 86 13 157 - -
Pumo3g01450 563 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Pumo3g01450 563 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Pumo3g01450 563 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 177 - -
Pumo3g01450 563 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01450 Pumo-Chr3 22896573 22900209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01450 1 559 NAC Transcription Factor Family AT5G04410 35.574 1.19e-101 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo3g01450 NAM 4.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01450 - - gmx:100808260 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01450 3 22896573 22900209 Pumo3g01450 3 22896573 22900209 ECH