Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01447 ATGGCCTCATATTTTCACGAAGAGCCTGTACCTCATCTTCCAAAGATTGCATTGATTCCAGCAACTTCTGGAGTTCTGCAATTTTGTTCCCACAAGCACACCTTGCTGAGGCCAGAATTGCATTCAGTTGATTCAGGTACTAGTAGGAGTGTAAGCTATGGTGAGCTAAGAAGGTCTATTTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGGAAAGGTGATGTAGTATTTGTATTGTCACCAAACTCAACCTTGTACTCAGCCATATGCCTAGCTGTGTTATCAGTTGGAGCAGTTCTGACCACTGCCAACCCCATCAACACTGCATCAGAAATTGCGAAGCAAGTGTGTGATTCAGGTGCTAAACTAGCCATCTCAGCACCTGAAGAGCTACACAAATTGGTCCCAACTGGGGTTCGTACAATTCTCACTTCTCATCCTTGTGTTGGGGAAATGTTATCAGTTGAAGAGTTAATAGAAGGCTGTTATAATTCACGGGAGTTGCCACAAGTTCGTGTAGCACAATCAGACACTGCTGCTATACTTTACTCTTCGGGGACCACTGGGATAAGCAAAGGATTGTTGTGTGTTGGTGTTACAACAGTTTTGATGCAGAAATATGACTTCCAAGCTATGCTTGTTGCAATAGAGAAGCACAAGGTGAATAACTTACCAGCAGTGCCACCAGTGATCCTTGCACTAGTAAAACATTCAAGCAAAGCTAGGTGTGACTTGTCCAGCCTAAGAAGGGTGGGGTCAGGTGCTGCACCTTTGAGCGAGGAAGTGACACAAGAGTTTAGAAGGATGTTTCCTTGGGTTGAACTAAGGCAAGGTTATGGGCTAACAGAAACTTGTGGTGGAGCAACATTTATTGCCTCAGATAAAGATGCTATAGCACGTCCAGATTCATGTGGGAAGTTGATTCCAACTTTTTGTGCAAAAGTGATAGACATTGAAACGGGGAAGCCTTTGCCTCCTCACAAAGAAGGAGAGTTATGGTTCAAAAGTCCTACCATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAAGTGCAACAATTGATTCAGAAGAGGATTTGGTATTCAAGATTTTGGACAGTCACAATTCACGATTCTTTAACATTGTTTCGCTCTTCAAGAACCCCACTCAGATATTGAATGCGGAGGAACTAAAGAGATAG 1191 0.4307 MASYFHEEPVPHLPKIALIPATSGVLQFCSHKHTLLRPELHSVDSGTSRSVSYGELRRSIYSLASALFHGLEVRKGDVVFVLSPNSTLYSAICLAVLSVGAVLTTANPINTASEIAKQVCDSGAKLAISAPEELHKLVPTGVRTILTSHPCVGEMLSVEELIEGCYNSRELPQVRVAQSDTAAILYSSGTTGISKGLLCVGVTTVLMQKYDFQAMLVAIEKHKVNNLPAVPPVILALVKHSSKARCDLSSLRRVGSGAAPLSEEVTQEFRRMFPWVELRQGYGLTETCGGATFIASDKDAIARPDSCGKLIPTFCAKVIDIETGKPLPPHKEGELWFKSPTIMKGYLGNLEATSATIDSEEDLVFKILDSHNSRFFNIVSLFKNPTQILNAEELKR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01447 396 ProSitePatterns Putative AMP-binding domain signature. 184 195 IPR020845 -
Pumo3g01447 396 Gene3D Luciferase; Domain 3 299 360 - -
Pumo3g01447 396 Pfam AMP-binding enzyme 197 362 IPR000873 -
Pumo3g01447 396 Pfam AMP-binding enzyme 44 196 IPR000873 -
Pumo3g01447 396 Gene3D - 198 298 - -
Pumo3g01447 396 Gene3D - 53 197 - -
Pumo3g01447 396 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 197 360 - -
Pumo3g01447 396 SUPERFAMILY Acetyl-CoA synthetase-like 44 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01447 Pumo-Chr3 22855213 22860909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01447 4 360 Monolignol Biosynthesis Gene Families AT1G20510 35.437 2.03e-70 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01447 K10526 - gmx:100796728 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01447 3 22855213 22860909 Pumo3g01447 3 22855213 22860909 ECH