Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01440 ATGACAGATTTTCAGCCGTTACAGCAGAAGCCTGAGCCTGCTGATGCCCATGCCGAGTTTGAGAGGGGACTGGAGGAGTTTATGCGTGGGCACTTGGATGATTGTATGTCCTTTGCTTCGTGTAGCTCGTCCCGTGCACCAGATGATGAGGACGACGAGGGTGATCAGCTGGTTCGGAGGAGAAGGAGGTCTGACCTTGAAGGGGATGATTTGGCAGAATCGTCGGCTGCACGCAGGCGGCATTCGAGGATTTTGAGCAGGTGGGCTGCACGGCAGGCTCAGGAGATGATAACTACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTCGCCGGATTGCATACTGTGTCGATGTTGGATTCTTCTTTTCTGAGGGGCTCGCAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCGAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAAGATGAGCATTTGTTGAACCGGGCGCGTGAAAGGATGAGGGTGAGGTTGCGGCAGCAGAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGATCAAGGAATGCACATGGGGATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCAGGGATGGATGGAAAGCGGTATTAGTGATCATTCATCCAATGTGAGTCAGAGAAACAATAACCGGAGAGCAGAATGGCTTGGAGAAACGGAGCGCGAGAGGGTAAGAAGTATCAGGGAATGGGTGCAAATGATTAGCCAGCAGAGAGGTTCGCGTGGGAGCCGAAGGGATACTCAAGTAAGTGAGGGTGCTCAAGCTGATCGAGTCCGTGATGTAGTAGCTGATAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTTAAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTTAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCACCATCTATGGCTGCAAGTGAATTAGTTCAGCTAAGACAACGACACACGGTCTCTGGTTTAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCACCAGTCCTGATACCACATTAAATAGTAATGCGAGTGAAACAAGAGGCGATGAGAACCAAGCAAACAGTCTGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCGAACAGGAACTTTGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGAAACTGGCAACAGAGTCCATTCAATCAGACGAGAGATGGAAGGGCAGTCGGTGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAAGATCCTCATCCACGGGAAGCTCAAAGAATTTGGCATGATGATAACACAAGGGAAACTGTTGGTAATTGGTCCGAAGGACCTTCTGGACCTTCAAGGAATCGCCGTGGGGTTCCTTTTAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTACGTAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCGGAACTTGCCAACACCAACTCCTGCCTCTCCTGAGCGGGATCCAGACCAGCAGGGTGATGAACGTGACGAGGGTCAGCATGAAACCATTAACAGACCTACACTGGTGTTGCCTTCTCCACCAGTACCTCCCCCACAGCCTCTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCAGCTCTGAACCGCTCAGCTGGTGAAAGTGGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2550 0.4851 MTDFQPLQQKPEPADAHAEFERGLEEFMRGHLDDCMSFASCSSSRAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRQQRNSDSNTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVQGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRSIREWVQMISQQRGSRGSRRDTQVSEGAQADRVRDVVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGTSPDTTLNSNASETRGDENQANSLVDGQQENYEQQQIRSLETDVRQLPNRTGTLESSTSESISWQEASNQGGNWQEQIAEEGGGNWQQSPFNQTRDGRAVGDWPQEPPRNLAGEDPHPREAQRIWHDDNTRETVGNWSEGPSGPSRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQGDERDEGQHETINRPTLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGESGLSAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01440 849 MobiDBLite consensus disorder prediction 667 682 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 40 78 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 1 22 - -
Pumo3g01440 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 847 IPR013083 -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 483 592 - -
Pumo3g01440 849 Pfam Zinc finger, C3HC4 type (RING finger) 794 841 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 483 534 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 434 471 - -
Pumo3g01440 849 ProSiteProfiles Zinc finger RING-type profile. 797 836 IPR001841 -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 551 572 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 222 244 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 125 146 - -
Pumo3g01440 849 CDD mRING-HC-C3HC5_NEU1 794 846 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 650 693 - -
Pumo3g01440 849 SUPERFAMILY RING/U-box 796 842 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 177 221 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 298 320 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 173 244 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 52 78 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 298 312 - -
Pumo3g01440 849 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 849 - -
Pumo3g01440 849 Coils Coil 726 746 - -
Pumo3g01440 849 MobiDBLite consensus disorder prediction 433 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01440 Pumo-Chr3 22754602 22761031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01440 797 843 C3H Transcription Factor Family AT3G06140 42.553 1.64e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01440 - - gmx:100805607 1588.55