LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01427	ATGAACTGTCTTCAGAATCTTCCTCGATTCTCTGTTTTGCCCTTCGAAACACTTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGGGAATCGTCAATAATTCTCATCAAAATCGAAGTATGACACTCAAGGCTGCTTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATGAGGAGGAGGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTATAACTTCATCCGCCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTAAAGATGTTGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATCCAGACCTTGAATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATCTACGGATGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCTGGGTTATAAACTTAATGAGGCTCATACACTACTTCAGAGCAAAAGGTCGTCCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTCTTACAGGCCATAGTAAGAAGCCTGTCACTTTGTCATGGGAAGACAGCAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAGATTTTGATGATAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACTCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAGAGATGAGCTTGTAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTTGATGATACAAGCAGTGTTCGTGGCTCTCTTCGGGAGAGATTGACTGGTGATGATCCTGATCTCACAACGGATGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATCAGTGA	1119	0.4236	MNCLQNLPRFSVLPFETLVTRHRKNLPLSLGIVNNSHQNRSMTLKAASGSIPSADTSSADEEEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPKDVDKLRRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEAHTLLQSKRSSFPKLDAIKSATADILTGHSKKPVTLSWEDSNCSTVEISGLDIGWGQRIPLDFDDKEGLWFLKRELPEGLYEYKYIVDGEWTCNRDELVTSPNKDGHVNNFIQVLDDTSSVRGSLRERLTGDDPDLTTDERLRIKEFLEACPDEDQ	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01427	372	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	21	370	-	-
	Pumo3g01427	372	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	167	225	IPR000387	GO:0016311\|GO:0016791
	Pumo3g01427	372	CDD	DSP_laforin-like	89	236	IPR045204	GO:0019203
	Pumo3g01427	372	SMART	dsp_5	90	240	IPR020422	GO:0006470\|GO:0008138
	Pumo3g01427	372	Pfam	Glycogen recognition site of AMP-activated protein kinase	249	332	IPR032640	-
	Pumo3g01427	372	SUPERFAMILY	E set domains	247	331	IPR014756	-
	Pumo3g01427	372	Gene3D	Immunoglobulins	245	335	IPR013783	-
	Pumo3g01427	372	Gene3D	Protein tyrosine phosphatase superfamily	83	363	IPR029021	-
	Pumo3g01427	372	MobiDBLite	consensus disorder prediction	44	69	-	-
	Pumo3g01427	372	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	87	231	IPR029021	-
	Pumo3g01427	372	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	90	247	IPR020422	GO:0006470\|GO:0008138
	Pumo3g01427	372	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	245	335	-	-
	Pumo3g01427	372	Pfam	Dual specificity phosphatase, catalytic domain	133	228	IPR000340	GO:0008138\|GO:0016311
	Pumo3g01427	372	CDD	E_set_AMPKbeta_like_N	249	330	-	-
	Pumo3g01427	372	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	83	264	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01427	Pumo-Chr3	22602785	22608809	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01427	89	371	Protein tyrosine phosphatase (PTP) family	AT3G52180	71.025	2.79e-153	431

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01427	-		-	gmx:100804010	697.197