Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01425 ATGGGTGAGAGTCAAGAGAACGAAGCTCTTCCAAAGAACAAGCCTTCCACTGAACAGGACGTTACTGATGAGCTAGACCTGAGAATGAAGAAGTATCTCAGAGGAGAAGGTGCTAATTTGGAGGTTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCAGTTAGGGAAGAGTTATATGGAAAATCTGCAAAAGCTGCTGCTAAGGCTGAGAAGTGGCTTATGCCTAGTGAAGGAGGCTATCTGGAGGCTGAAGGCTTGGAGAAGACATGGAGGATCAAACAGGAGGCAATAGCTCGTGAAGTAGATATCTCAAGCTCAAGGAAACAATATGATATTATTTTACCAGAACTTGGTCCGTACACTCTGGATTTTACTTCAAGTGGCCGGTATATGGCTGTGGGTGGTCGTAAGGGCCATCTGGGAATTGTGGACATGATAAATCTGAACCTAATTAGAGAGTTTCAGGTAAGGGAAACAGTGCGTGATGTCGCATTCTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAGTATCCATACATCTATAATCGAGAAGGCACAGAGCTTCACTGCCTCAAGGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCTTGGCTTCAATCAACAAGTTTGGACAACTTCGTTATCAGGATGTTACAATGGGTTCCATGGTCGGTAATTTTCGAACTGGCTTAGGACGTACAGATGTAATGCAAGTGAACCCTTTCAATGGGGTTGTTTCTTTGGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCAACCAGCGCTTCTCCTCTTGTCAAGATGCTATGTCATCATGGGCCTGTCTCAGCACTGGCATTTCACTCAAATGGCCACTTGATGGCCACTGCCGGGAAAGATAAAAAAATTAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTTCAAACCTTACCAGGTCATGCAAATACTCTGGATTTTAGTCAAAAAGGCTTGCTTGCTTGTGGTAATGGTTCATTCATCCAGGTTCTGCGAGATGTTTCTGGTACACAGAATTATTCTAAGTACATGACTCATTCCATGGTAAAGGGTTACCAGATAGGAAAATTAGTTTTTCGACCATATGAAGATGTTCTAGGCATAGGGCATTCCATGGGCTGGTCTAGTATTCTTATTCCAGGAGCAGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTTGAAACTTCTAAACAGAGGAGAGAAAAGGAAATACGGTCTCTTCTTGATAAGCTTCCACCTGAGACTATCATGCTGGATCCCAGCAAGATTGGCACGGTGAAACCAAGAAGAGAGAGAACAACAAAGCAAGAGAGGGAAGCTGAAATAGAAGCTGCCGTTGAAGCTGCTAAGGACATGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAGCCAGGTAAAAGGGTACAGAAAAAGCAAGAGGCAGTTACTAGAGTGAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAGCATATCAAGAAAGAAGCAGAAAACTAGCGAGGGTGTTGAACTACCGAAATCTCTACAGCGGTTTGCTCGTAAAAAAGCATCGTCATGA 1608 0.4353 MGESQENEALPKNKPSTEQDVTDELDLRMKKYLRGEGANLEVLKDKKLKGQLAVREELYGKSAKAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQEAIAREVDISSSRKQYDIILPELGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLNLIREFQVRETVRDVAFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLENHFLLASINKFGQLRYQDVTMGSMVGNFRTGLGRTDVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSFIQVLRDVSGTQNYSKYMTHSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKPRRERTTKQEREAEIEAAVEAAKDMKLKKKTKGRNKPGKRVQKKQEAVTRVKRPYLEQKIQEEESISRKKQKTSEGVELPKSLQRFARKKASS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01425 535 SMART BING4CT_2 355 435 IPR012952 -
Pumo3g01425 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Pumo3g01425 535 Gene3D - 242 353 IPR015943 GO:0005515
Pumo3g01425 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Pumo3g01425 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Pumo3g01425 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Pumo3g01425 535 SMART WD40_4 105 144 IPR001680 GO:0005515
Pumo3g01425 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Pumo3g01425 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Pumo3g01425 535 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Pumo3g01425 535 Coils Coil 450 470 - -
Pumo3g01425 535 FunFam Os01g0183100 protein 185 379 - -
Pumo3g01425 535 SUPERFAMILY WD40 repeat-like 113 382 IPR036322 GO:0005515
Pumo3g01425 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Pumo3g01425 535 MobiDBLite consensus disorder prediction 1 24 - -
Pumo3g01425 535 Gene3D - 90 241 IPR015943 GO:0005515
Pumo3g01425 535 MobiDBLite consensus disorder prediction 482 518 - -
Pumo3g01425 535 MobiDBLite consensus disorder prediction 1 16 - -
Pumo3g01425 535 PANTHER WD-REPEAT PROTEIN BING4 8 530 IPR040315 -
Pumo3g01425 535 MobiDBLite consensus disorder prediction 468 535 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01425 118 331 U-box Gene Family AT2G33340 24.779 2.42e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01425 K14768 - gmx:100786818 991.104