Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01412 ATGGCCACCGAAGACTACCCCATCATCGATTCTCCCTCCCACGCGCAGCCTCACCTCCACGCGCCCACGCGCCACCATTTCCCTTCCTCCTCCTCATCCAGTCCCACCACTCTCCCGGCCGCCGACTCCGCCACCGCCGACTACTACCCCCACGCCTCCTCCTTCTCCGACGACTCCGCCAAATCCAATTCCAAACGCGCCTCCGCCGCCGGCAGCCCCTACTACTACGACAAGAAGCTCAAGTCCGCCGCCGATCCAGATCCGGCGACCGACACGGCCATCCGAGGCGGTGGCGGCGGAGGCGATTACCGGAAGGATCGAGAAGAATGGAGCGACACGGCGATCGCGTGTCTGTTGGAGGCGTACACGGAGAAGTTCAATCAGTTGAACCGCGGCAACCTCCGCGGCCGCGATTGGGAGGAGGTGGCGGAGGCGGTGGGAGAACGGTGCGGCGGCGGAGGCGGTGGTGGAGAGGGGAAGCATCACAACAAGAGCGTGGAGCAGTGTAAGAATAAGATTGATAATTTGAAGAAGAGGTATAAGGTGGAGCTTCAGAGAATTGGGAGTGGTGGCATTGCCACTAGTCACTGGCATTGGTTTAAGAAGATTGAAGCTATTGTTGGTAACTCTCTCAATGTCAAAACTGTTTCTGATGATGACAAGGCTGGTAGTAGTGGTGGTGGTGGGGGTGCTAATTCCTCTTCTATGGCTAGACAAACCAAGAACAGATATGCTCCTAGCAATGCTGCCGTGGCAATCAACCACAAAACAAAGCCGGCATCGAATCTAAAATGGCATAGAGTTTTGTTTAAAATTAGTGGCTCTGCATTGGCTGGAAACTGCCAGAATATTGAGCCCAAGGTGGCCATGCAGATTGCTAGGGAAGTGGCAACAGCTTGCCGCCTTGGGGTGGAGGTGGCCATTGTTGTTGGTGGTCGGAACTTCTTTTGTGGTGATGCATGGGTGTCTGCTACTGGGTTGGATAGACCTATGGCATACCAAATAGGTATGATGGCAACAGTTATGAATTCTCTTTTGCTTCAATCTGCTTTGGAGAAGCTGGGTGTTCAGGCACGTGTTCAGAGTACATTCTCAATGCCAGAGGTTGCTGAACCATATAGCAGGCAACGAGCTATTAGACATCTTGAGAAAGGAAGGGTTGTCATATTTGGTGGTGTTGGTGCTGGCACTGGAAATCCACTTTTTACCACCGATACCGCTGCCGCTCTTAGAGCTTCTGAGCTTAATGCTGATGCGGTTCTGAAAGGTACCACTGTGAATGGTGTCTTTGACTGCCATCCCCGTAATGATAATGTAACACTTGATCACATTTCCTTTAGGGAAGTTGTTTCTAGGGGCGTCACCTCCATGGATATGATGGCACTGGCATATTGTGAAGAGAATGGAATACCTGTTGTAGTCTTCAACATGCTTGAACCGGGGAATGTTTCAAGAGCATTATGTGGAGATCAAGTTGGCACTTTGATCGATCAAACTGGTAGAGTGGAGCATCAGCTTCCTAGTTAA 1527 0.5187 MATEDYPIIDSPSHAQPHLHAPTRHHFPSSSSSSPTTLPAADSATADYYPHASSFSDDSAKSNSKRASAAGSPYYYDKKLKSAADPDPATDTAIRGGGGGGDYRKDREEWSDTAIACLLEAYTEKFNQLNRGNLRGRDWEEVAEAVGERCGGGGGGGEGKHHNKSVEQCKNKIDNLKKRYKVELQRIGSGGIATSHWHWFKKIEAIVGNSLNVKTVSDDDKAGSSGGGGGANSSSMARQTKNRYAPSNAAVAINHKTKPASNLKWHRVLFKISGSALAGNCQNIEPKVAMQIAREVATACRLGVEVAIVVGGRNFFCGDAWVSATGLDRPMAYQIGMMATVMNSLLLQSALEKLGVQARVQSTFSMPEVAEPYSRQRAIRHLEKGRVVIFGGVGAGTGNPLFTTDTAAALRASELNADAVLKGTTVNGVFDCHPRNDNVTLDHISFREVVSRGVTSMDMMALAYCEENGIPVVVFNMLEPGNVSRALCGDQVGTLIDQTGRVEHQLPS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01412 508 FunFam Uridylate kinase isoform A 257 502 - -
Pumo3g01412 508 Pfam Myb/SANT-like DNA-binding domain 107 206 IPR044822 -
Pumo3g01412 508 Pfam Amino acid kinase family 267 476 IPR001048 -
Pumo3g01412 508 MobiDBLite consensus disorder prediction 25 41 - -
Pumo3g01412 508 Coils Coil 166 186 - -
Pumo3g01412 508 Gene3D - 110 182 - -
Pumo3g01412 508 CDD AAK_UMPK-PyrH-Ec 267 497 IPR015963 GO:0005737|GO:0006221|GO:0033862
Pumo3g01412 508 MobiDBLite consensus disorder prediction 1 105 - -
Pumo3g01412 508 FunFam Aspartate/glutamate/uridylate kinase family protein 110 182 - -
Pumo3g01412 508 Hamap Uridylate kinase [pyrH]. 263 497 IPR015963 GO:0005737|GO:0006221|GO:0033862
Pumo3g01412 508 MobiDBLite consensus disorder prediction 49 69 - -
Pumo3g01412 508 MobiDBLite consensus disorder prediction 218 241 - -
Pumo3g01412 508 PANTHER URIDYLATE KINASE 104 502 - -
Pumo3g01412 508 SUPERFAMILY Carbamate kinase-like 264 496 IPR036393 -
Pumo3g01412 508 MobiDBLite consensus disorder prediction 227 241 - -
Pumo3g01412 508 Gene3D - 255 504 IPR036393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01412 Pumo-Chr3 22259764 22262780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01412 95 236 Trihelix Transcription Factor Family AT3G14180 38.462 1.19e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g01412 AA_kinase 4.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01412 - - gmx:100791426 829.706