Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01406 ATGGTAAAACAAAGGGTTGAACAGCATGTTACAACAGAAGGGCAAAGGAAAAAGAACAAGAGGAAGAAGCAAGTTTTGGTTCCTCGTCCTGCATGCTCATGGGTGTATTTTAGTAAGGAGTTTATCAAAGAGTACATTGCTTCCCATCCTGAGTCACCAGGCCTTAAAGCTGCAACAAAGGCTGCCTCAAATGCGTGGAAATCAATGAGTCTTGAAGAGAAGGAAAAGTATGCTAGGCATGCGCGAGAAGTGTGGGATGGCTACTTGAGTTCAGGTGCCGCCCCTTACCCCAAGCCAAGGAAACAGCTTTTCTACTATGAGAGCATATATCTTGAAGGGTCTTCTGCTCCAGTTCCAACGATTGTTCCATATCTGTTTTCTTGGGGAGAGGAGGAGATTGCTGAGAGAGAAAAACGAGAAAAGGAACTTGGCGGCTATGGTTCTGGGGAGCTAGCAAGCAAGAAGAAATGCCATCATATGGAGTTCCCAGAGTATAGAGATCATCCAGATGGCCCACCAATCACCACAGAAAGCAGTAGAATTGGGCATGGTCCTCTTAGACCAGAATCAAATGAGGAAGACATCCTCGGTTATCCTAGGAGTAGAACTGTGTTGAGTGGAGATGTGGATTTAGTAGTTGAATCAATCGAAGCTCCTTGTCAGAACAGAGAATATGGTTGCAATGAAACTCTGGATTACATAACCAGTAATGACCATGAAGTGACATGCATCCATTCTCCATGTACCTGTCCACTTCAAGACTGCAACTATGTTGGGTCATTTGAACAGTTGGCATTGCATTTCAGCAGTAAACACTGGGATTCTGGAAGACGATTCAAATATAATCATCCATTGGCTATCTCTTTACAGATGGATGAACAATTCCTTGTTCTCCAGGCAGAAGAAGATGGGGTTCTTTTTCTTCCTCAACAAGGACACAGAAACTAA 948 0.4378 MVKQRVEQHVTTEGQRKKNKRKKQVLVPRPACSWVYFSKEFIKEYIASHPESPGLKAATKAASNAWKSMSLEEKEKYARHAREVWDGYLSSGAAPYPKPRKQLFYYESIYLEGSSAPVPTIVPYLFSWGEEEIAEREKREKELGGYGSGELASKKKCHHMEFPEYRDHPDGPPITTESSRIGHGPLRPESNEEDILGYPRSRTVLSGDVDLVVESIEAPCQNREYGCNETLDYITSNDHEVTCIHSPCTCPLQDCNYVGSFEQLALHFSSKHWDSGRRFKYNHPLAISLQMDEQFLVLQAEEDGVLFLPQQGHRN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01406 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 268 IPR013083 -
Pumo3g01406 315 Pfam HMG (high mobility group) box 28 89 IPR009071 -
Pumo3g01406 315 ProSiteProfiles Zinc finger SIAH-type profile. 215 273 IPR013010 GO:0008270
Pumo3g01406 315 Gene3D High mobility group box domain 11 90 IPR036910 -
Pumo3g01406 315 Pfam Seven in absentia protein family 210 285 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo3g01406 315 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 27 83 IPR009071 -
Pumo3g01406 315 MobiDBLite consensus disorder prediction 1 24 - -
Pumo3g01406 315 SUPERFAMILY HMG-box 12 88 IPR036910 -
Pumo3g01406 315 SUPERFAMILY TRAF domain-like 216 311 - -
Pumo3g01406 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 149 309 IPR044286 -
Pumo3g01406 315 CDD HMG-box_SF 29 88 - -
Pumo3g01406 315 MobiDBLite consensus disorder prediction 164 193 - -
Pumo3g01406 315 SMART hmgende2 26 97 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pumo3g01406 Sina 1e-12 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01406 - - gmx:100782920 399.823