Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01398 ATGAGTGACCCTTATGGGCTACCGGAGGATCTCCGGCGGCTTATACCAGCCAGAACCCATTTGAACACTTCAAACACACACCTACTTGAGCCACTTTGTGTTCACCATGGTCTAAGTAGTGCTGTTGCTGCTACACCCAACACCTATGACCCCAACATGGTTGGGGACGTTTTCTTCCCTCGTGGTTTCACTCATCACTTTGCTCATCATCATGACTACTCTTCTTCCTCTGGTGTAAACCCCGCTACTACTGCTGCTACTACTACTGCGGTCTCGGATCATGCATTCTGCGGCATGGAGAGTGCAGAGAAAGGGTGGTTTGGGTTTGATTCCGGGAACAACAGGTGGCCTAGACAGGAGACCCTTTCGCTCCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAAGTATTACAAGAAGACAAAGGAAGGCAGCTTGAAGCAATATGTGGAGATCAAGCAAACACTGCTCATGCCTCAACTTCAGATAAAACCCATCGTGCTGGTGGAAACACTGCTGATACTATTCAAACACAAACCTTCACAATTAACCAAGACCACAACAATGGTGGTGATTCTAATAATAATAACCCCAAATGCTCTGAGAGCCTCAGCATCTCAAATTCATCTGAATTCGAGACATCCTCATCAGAGAACAACGATGAGGACCTTTCAGCCATTGCATTCATGATGAAGCAGTCAAGGGAGAAGCAGAAAGGGTTGGATCATCATCATAGGCAAAGTGATCATCATAGGAGGGTGAGAAAAAGTTGGAGGGCTAAAGTGGAGGAGATTGTGGATTCCCACATGAGGAAGATCATAGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAGCAAAGAGAGCAAGAGATGGCATCTAGGGAGGAAGAAAGGAAGAGAAAAGAGTCAATGTGGTTTGACCAACAGGTGCATGAACTGTGGACTAAAGAGAAAGCATGGGTTGAGGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACATTGGGATAGGACTTGAAGCGTTGCCATTGGATGAAGCCATGGTTGAAGAACCACCACCAAATAAGAACAAGAGCCAGGGAAGTAATATTGATGCCAATGAGTTTCCCTCTGAGGGTGTTGATCATAATAATAGAAGTAGTAGTAGTAGGTGGACAGAAATGGAGATTTCAAACTTGATACAACTAAGGACTAGTTTTGAGCAAAGATTCAGAGAAAATAATGGGTACATGGAGAATGGACTTTGGGATGAAATAGCAGCAAAGCTGGGATGTTTGGGGTTTGATAGGAGTGCAAGTGAGTGCAAGCAAATATGGGATGAGATCAGCATCTCTCTGAGAAGGACAGTGGAATGA 1485 0.4431 MSDPYGLPEDLRRLIPARTHLNTSNTHLLEPLCVHHGLSSAVAATPNTYDPNMVGDVFFPRGFTHHFAHHHDYSSSSGVNPATTAATTTAVSDHAFCGMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKVLQEDKGRQLEAICGDQANTAHASTSDKTHRAGGNTADTIQTQTFTINQDHNNGGDSNNNNPKCSESLSISNSSEFETSSSENNDEDLSAIAFMMKQSREKQKGLDHHHRQSDHHRRVRKSWRAKVEEIVDSHMRKIIETQDAWMERMLSVVEQREQEMASREEERKRKESMWFDQQVHELWTKEKAWVEARDAALIEVVRKHIGIGLEALPLDEAMVEEPPPNKNKSQGSNIDANEFPSEGVDHNNRSSSSRWTEMEISNLIQLRTSFEQRFRENNGYMENGLWDEIAAKLGCLGFDRSASECKQIWDEISISLRRTVE 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01398 494 PANTHER FI21293P1 76 493 - -
Pumo3g01398 494 FunFam Trihelix transcription factor GT-2 428 491 - -
Pumo3g01398 494 MobiDBLite consensus disorder prediction 392 426 - -
Pumo3g01398 494 CDD GT1 114 180 - -
Pumo3g01398 494 Coils Coil 326 346 - -
Pumo3g01398 494 MobiDBLite consensus disorder prediction 221 259 - -
Pumo3g01398 494 FunFam Trihelix transcription factor GT-2 116 178 - -
Pumo3g01398 494 Gene3D - 116 176 - -
Pumo3g01398 494 Gene3D - 428 491 - -
Pumo3g01398 494 MobiDBLite consensus disorder prediction 398 426 - -
Pumo3g01398 494 MobiDBLite consensus disorder prediction 273 294 - -
Pumo3g01398 494 ProSiteProfiles Myb-like domain profile. 114 173 IPR001005 -
Pumo3g01398 494 ProSiteProfiles Myb-like domain profile. 420 486 IPR001005 -
Pumo3g01398 494 Pfam Myb/SANT-like DNA-binding domain 114 175 IPR044822 -
Pumo3g01398 494 Pfam Myb/SANT-like DNA-binding domain 426 487 IPR044822 -
Pumo3g01398 494 CDD GT1 426 492 - -
Pumo3g01398 494 SMART sant 112 175 IPR001005 -
Pumo3g01398 494 SMART sant 424 488 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01398 Pumo-Chr3 22083641 22086139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01398 115 491 Trihelix Transcription Factor Family AT5G03680 38.213 3.41e-68 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g01398 Myb_DNA-bind_4 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01398 - - gmx:100787750 784.637