Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01397 ATGAGTCCTCCAGCTGAATCCAACAATATGGAAGATGGCAAGCCCCAAAATGTCGGCCACCAAGTCCAGTCTCGCTTCGTCGACTTCTGCAAGAATGGGCTAGCATTGGAAGACAAAAGTTGTAAAGAAGCAATGAATCTGTTTGGAGAAACCAAGCATATTCTACTGACAAACTTTTCGTCAATGGGGAATGGAACGTCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTTGTACTCTGTCAAGAAATTGATCCAGAAAAATGAGGAGGGTGAGAAGGAAGAGACCGAGAACACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAGCTAAGCTTAACATTGCAGATTTTTTTAAAGAACTTCAACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGAAAAAAAGGCTTGAGGCAAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTCGTGGCAACTGACACAAATGTTGAAAAGAACTCATCTGTTACTGTTCATGCATCTGAATATCATCGATTTGGATGGTTGCTTTTCTTGTCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTAGTGACTTGCACCAATGGTTTAATTTCAATCTTGGGCATCTTAATTATTCATGTTCCTACTCGTTTTCGGAATTTCAACATTCATGACTCCTCACACTTTGTTAAGAAAAGTAACAAAGTCGTGGACCTCCTTGCATCACTTTGCAACATATACAACACTTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCTTGCTTGGCGTCTGAATGCGAAACTGAAAACCTAGAGAATATCGATAAAGATGGTTTGATCTATTTTAAAGACCTGATGGAAGAATCGTCTCTACCTTCTAGTTTAAATATGTTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAATTGGATGAGAGGTTATTCATTAATGAGGATGACAGCCTATTAGCTTCAGTAAGCTTGTCTGGAGGTTGTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGTTAAGACCATTACAAGTCCACTCTCACCTCACCGCTCCCCTGCATCGCATGCTAATGGCATCCCGGGTAGTGCAAACTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCATCGAAGCCCTCGCCAGAGCTGGAACGATTTTTGACATCATGTGATAGGGATGTTACAAATGATGTGGTGCGCAGAGCACAGATTATATTGCATGCTATATTTCCTAGTAGTCCTCTTGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAATCTCATGGACAATATATGGGCCGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGTTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCTGAATTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATCGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCGTTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAACTCTTTGGCAGTTGCCAGACCTTCCCTTTCTGCAGAGATAAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTGCCACCACTGCCTACCTTGCCCAAGCTTGAAAGTTCACCAACTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTTTTAATGGAAATAAATTCTTTTACTTCACCAGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCTGCATTTGCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTATCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAACTGAACCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCTTCAGGCCAAAATGGGAGAACAGGACAGGAGCATGTTGAAATAATTACCTTTTACAATGAAATATTCATTCCTTCTGTAAAGCCACTGCTGTTTGAACTTGGCCCTGGACCAACTACAAAAAGCAACCGAATACCTGAAGTTAATAATAAAAGTGACGGCCATTTAGCTCAATGTCCAGGGTCTCCTAAAATATCACCTTTCCCAACCCTTCCTGTTATGTCTCCAAAAAAAGTGTCAGCCACACACAACATATATGTCTCTCCGTTACGATCGTCCAAGATGGAAGCTCTAATATCACGTAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAACACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACTGTTTGAATGGAAACCAGAAGGTGGGAGTTCCCCTCGATTTTGATGATGTTGATGTGGGCTTGGTTATTGACTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCACCATTGAAATCAGAGCAACCTGCCTCCTAA 3024 0.4153 MSPPAESNNMEDGKPQNVGHQVQSRFVDFCKNGLALEDKSCKEAMNLFGETKHILLTNFSSMGNGTSEEAERYWFAFILYSVKKLIQKNEEGEKEETENTGLSLCRILRAAKLNIADFFKELQQFVVKAGPTLSNLYGTDWKKRLEAKEMHANAIHLKILSKYYKRVFGEFFVATDTNVEKNSSVTVHASEYHRFGWLLFLSLRVHAFSRFKDLVTCTNGLISILGILIIHVPTRFRNFNIHDSSHFVKKSNKVVDLLASLCNIYNTSEDELRKTMEKANNVIADILKKKPCLASECETENLENIDKDGLIYFKDLMEESSLPSSLNMLEKDYDYMIRNKSELDERLFINEDDSLLASVSLSGGCVSAGGVKRKFDSMASPVKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLASKPSPELERFLTSCDRDVTNDVVRRAQIILHAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRLLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPLPTLPKLESSPTQNGDIRSPKRNVLMEINSFTSPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSIFFNRHIDQIILCCFYGVAKISQLNLTFKEIVYNYRKQPHCKPQVFRSVFVDWSSGQNGRTGQEHVEIITFYNEIFIPSVKPLLFELGPGPTTKSNRIPEVNNKSDGHLAQCPGSPKISPFPTLPVMSPKKVSATHNIYVSPLRSSKMEALISRSSKSYYACVGENTHAYQSPSKDLTAINNCLNGNQKVGVPLDFDDVDVGLVIDSMVANSLYLQNGSCAPLKSEQPAS 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01397 1007 SUPERFAMILY Cyclin-like 730 876 IPR036915 -
Pumo3g01397 1007 Pfam Retinoblastoma-associated protein A domain 413 614 IPR002720 GO:0005634|GO:0051726
Pumo3g01397 1007 Pfam Domain of unknown function (DUF3452) 96 231 IPR024599 -
Pumo3g01397 1007 SUPERFAMILY Cyclin-like 421 616 IPR036915 -
Pumo3g01397 1007 Gene3D - 192 350 - -
Pumo3g01397 1007 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 21 1005 IPR028309 GO:0006357|GO:0051726
Pumo3g01397 1007 Pfam Retinoblastoma-associated protein B domain 732 858 IPR002719 GO:0005634|GO:0051726
Pumo3g01397 1007 Gene3D - 696 882 - -
Pumo3g01397 1007 MobiDBLite consensus disorder prediction 386 408 - -
Pumo3g01397 1007 SMART DUF3452_2 85 231 IPR024599 -
Pumo3g01397 1007 Gene3D - 416 604 - -
Pumo3g01397 1007 Coils Coil 269 289 - -
Pumo3g01397 1007 SMART RB_A_2 413 614 IPR002720 GO:0005634|GO:0051726
Pumo3g01397 1007 FunFam Retinoblastoma-related protein 1 683 893 - -
Pumo3g01397 1007 FunFam Retinoblastoma-related protein 1 192 350 - -
Pumo3g01397 1007 FunFam Retinoblastoma-related protein 1 416 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01397 Pumo-Chr3 22061121 22077185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01397 1 1003 Core Cell Cycle Gene Families AT3G12280 67.090 0.0 1355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Pumo3g01397 RB_A 1.6e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01397 K04681 - gmx:100777805 1819.28