Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01395 ATGATTTCTTCTGGGATTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGGCTCATATGTGCACGAATTCACCTGAATGCTGTGAGGAGATCCTTTCCTATTGCCTCCAGATCCAATCTCAGCATGATGGAGCGAGGTTGCCATGGTCTTGAACGCGTAACTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAATGCACAGTCTGCCTCTCAGAATACCAAGGCGAAGATATGCTGCGCATCCTCCCCTATTGTGGACATTCCTTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCCACTTGTCCTGTTTGTCGAATATCGTTGCGTGAATTTCCCGAGAGAGAGCGGTTAATGCAACCCTTGTTCAGCTCTGCTTTGCAACTTCATTATGGCATAGAATCCTTTGACACTCAGCATTATCACTGCATGATGGCTGATAATGGATTATCATCAAGAGCCCCTGACAACCATGGGGTGAATCCTATAGAGGAAGATCATTTTCCTTCTGAGGGTGGTGGAGCAGTTGCTATGGACAATATCACCTGTTTAAGTGAGGGTGACTTCATTAAGGATGAAGGGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGATTTGA 690 0.4507 MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNAVRRSFPIASRSNLSMMERGCHGLERVTVAKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPERERLMQPLFSSALQLHYGIESFDTQHYHCMMADNGLSSRAPDNHGVNPIEEDHFPSEGGGAVAMDNITCLSEGDFIKDEGKKHVESPSNFQI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01395 229 SMART ring_2 87 128 IPR001841 -
Pumo3g01395 229 CDD RING-H2_EL5-like 86 129 - -
Pumo3g01395 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Pumo3g01395 229 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Pumo3g01395 229 Pfam Ring finger domain 86 129 IPR001841 -
Pumo3g01395 229 PANTHER OS11G0150450 PROTEIN 1 187 - -
Pumo3g01395 229 SUPERFAMILY RING/U-box 81 135 - -
Pumo3g01395 229 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01395 Pumo-Chr3 22040905 22044124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01395 45 136 C3H Transcription Factor Family AT4G10150 42.391 8.30e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01395 - - gmx:100794979 455.292