Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01387 ATGCACTCCACCGCCGGCATGGAGTGGACGTTCTCCACGAAGTCCCACGCACCCTCCTCCTCGGACCCCAGCTGGGACGCCATCCAGCGCGGCGGCGCCACCCTGAGCCTGGGCGACCTCCGCTTCGTGCAGCGCGTGGGCAGCGGCGACATCGGAAGCGTGTACTTGGTGGAGCTCAAGGGCTCCAACGGGTGCCTCTTGGCGGCCAAGGTCATGGACAAGAAGGAACTCGTGGCCAGGAACAAAGACACCAGAGCTAAGGTTGAGAGAGAAATATTGCAAGTGGTGGATCACCCCTTTTTGCCCACTCTTTACGCTTCGCTCGATTCGCCACGCTGGTCTTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGCCAGCCCGACAAACGCTTCCACCACGCCGCCGTTAGGTTCTATGCATCTGAAGTTGTGGTTGCGTTGGAGTACCTACACATGATGGGGATAATTTACCGTGATTTGAAGCCTGAAAACGTGCTCATAAGATCAGACGGTCATATAATGCTCACAGACTTTGACCTCTCACTAAAAGGTGACGACACAACATCAACGGCTCTGATCGTGTTTGATCAAGATCCACCCACCAACACCTGTTCTAACGAACATTCCAAGAACCAATGCGCGCCCGCCATGTCATCATGCATGTTGCCCAATTGCATCGTGCCACCTGTCCCATGCTTCCACCCAAAACGAGGTCGTAGCAAGAGGTCCTCTCACTGTGGGTCCCTCGAGATCATAGCCGAGCCAATAGAAATTCGATCAACGTCGTTTGTTGGGACCCACGAGTACTTGGCGCCAGAAGTAATTTCAGGGGAGGGTCACGGTAACGCCGTTGATTGGTGGACATTGGGTGTGTTCATTTTTGAAATGTTCTATGGGATCACACCCTTCAAAGGGCTTGAGCATGAGCTAACCCTAGCCAACATAGTGGCTCGAGCCCTTGAGTTCCCTAAGGAACCCATGATCCCTGGACCAGCCAGGGATTTGATCTCACAACTTTTGGTCAAGGACTCAACAATGAGACTAGGGTCTACAATGGGTGCGGTGGCAATTAAGCACCATCCATTTTTCAATGGGGTAAATTGGGCATTGTTGAGGTGTGCTACCCCTCCATACATCCCTTCATCAGATAAGTGCAAGGAGTTGGTTCGAGTCTATAATTGCACAAACAATGCTATAGACTTCTATTAG 1230 0.5333 MHSTAGMEWTFSTKSHAPSSSDPSWDAIQRGGATLSLGDLRFVQRVGSGDIGSVYLVELKGSNGCLLAAKVMDKKELVARNKDTRAKVEREILQVVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHHAAVRFYASEVVVALEYLHMMGIIYRDLKPENVLIRSDGHIMLTDFDLSLKGDDTTSTALIVFDQDPPTNTCSNEHSKNQCAPAMSSCMLPNCIVPPVPCFHPKRGRSKRSSHCGSLEIIAEPIEIRSTSFVGTHEYLAPEVISGEGHGNAVDWWTLGVFIFEMFYGITPFKGLEHELTLANIVARALEFPKEPMIPGPARDLISQLLVKDSTMRLGSTMGAVAIKHHPFFNGVNWALLRCATPPYIPSSDKCKELVRVYNCTNNAIDFY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01387 409 FunFam Serine/threonine-protein kinase OXI1 125 193 - -
Pumo3g01387 409 Gene3D Transferase(Phosphotransferase) domain 1 125 197 - -
Pumo3g01387 409 SMART serkin_6 40 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01387 409 FunFam serine/threonine-protein kinase D6PKL2 39 124 - -
Pumo3g01387 409 Pfam Protein kinase domain 267 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01387 409 Pfam Protein kinase domain 42 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01387 409 SUPERFAMILY Protein kinase-like (PK-like) 18 387 IPR011009 -
Pumo3g01387 409 FunFam serine/threonine-protein kinase D6PK-like 265 388 - -
Pumo3g01387 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Pumo3g01387 409 ProSiteProfiles Protein kinase domain profile. 40 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01387 409 CDD STKc_phototropin_like 39 387 - -
Pumo3g01387 409 PANTHER FLIPPASE KINASE 1-RELATED 13 390 - -
Pumo3g01387 409 Gene3D Transferase(Phosphotransferase) domain 1 266 388 - -
Pumo3g01387 409 MobiDBLite consensus disorder prediction 1 25 - -
Pumo3g01387 409 Gene3D Phosphorylase Kinase; domain 1 39 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01387 Pumo-Chr3 21893399 21896690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01387 42 409 AGC Kinase Gene Family AT3G44610 63.613 6.16e-177 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pumo3g01387 Pkinase 1.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01387 K08286 - gmx:100786154 775.393