Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01382 ATGGAACTTGTCTCTGTGTCTGTCACACTCAGCAAATGTCAAACATTATCCTTTCCGAAACCAAAGCCAACCCAAATTCACGAACTTGCAATAAACATAAGATTACCCAACAAAACAAATCATTCCAATCTTTCATCTTCTTCTTCTTGTAGTTGGTCCATTACTAAGGTAGCAGCAACAACATACCCTTCCTTCAATCCTTCCACCACACAGAACCGCCACTGGATGGTGCTCATGAACACGCCTCCTCAAGGGATCAACTCCAAGCCACAAGTCATTGATTATTACGTCAACACTCTACAAACAGTTCTTGGCAGTGAGAAAGATGCTCAGATGTGTATATATGATGCTTCCTGGGACACTCACTATGGTTTTTGTTGTGACATTGATGAAGATATATCCTCCCAGCTGGCAAGTTTGCCTGGGGTCTTGAAGGTTAGGCCTGACCCGGATTTCAACTCTTTGAAAAAGGACTATAGTTTATCAAGTGGCCAAGCAGGTCGCCCATCAGGATTACAAACTAAATCCAATATGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTAGAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAAATTGTCGATCATTATGCTCAAATTTTGACCAAGGTCATGGGAAACGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGATGATTGTGCACAAGAGCTTGCTGGTGTGCCATGTGTCTCATCAGTTCAGCCGGATAACAATTTTGAGTCTGAAAATAAGGATTATGCAGGCAGTAACTTAGAAAATAGTTGGAATGTGTCCAACTCTTCGGAAGCAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGAGAGTTAGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCAAATCCACCAAGATACAACAGGAATCGTGCTGGATCATCAAGTTGA 1173 0.4169 MELVSVSVTLSKCQTLSFPKPKPTQIHELAINIRLPNKTNHSNLSSSSSCSWSITKVAATTYPSFNPSTTQNRHWMVLMNTPPQGINSKPQVIDYYVNTLQTVLGSEKDAQMCIYDASWDTHYGFCCDIDEDISSQLASLPGVLKVRPDPDFNSLKKDYSLSSGQAGRPSGLQTKSNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDHYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDDDCAQELAGVPCVSSVQPDNNFESENKDYAGSNLENSWNVSNSSEASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAGSSS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01382 390 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 175 367 IPR039206 GO:0016554
Pumo3g01382 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 177 266 IPR037045 -
Pumo3g01382 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 58 153 IPR037045 -
Pumo3g01382 390 FunFam Organelle RRM domain-containing protein 1, chloroplastic 176 265 - -
Pumo3g01382 390 SUPERFAMILY RNA-binding domain, RBD 286 387 IPR035979 GO:0003676
Pumo3g01382 390 FunFam Organelle RRM domain-containing protein 1, chloroplastic 266 390 - -
Pumo3g01382 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Pumo3g01382 390 Gene3D - 267 390 IPR012677 -
Pumo3g01382 390 SMART rrm1_1 299 372 IPR000504 GO:0003723
Pumo3g01382 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 366 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01382 Pumo-Chr3 21843666 21847813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01382 290 385 C2H2 Transcription Factor Family AT2G19380 32.292 3.34e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01382 - - gmx:100791652 690.649