Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01374 ATGCAGAAAACTTACTCTTTCTCCTGCATATCTTCTTGTGGCAGTGATAGTGCCTGCTTAGAAGCTGACGAGGTTGACAATGAAGATTCCATTTCCCTCTCCCTTGGCCCTCCTACTCCTAGCCTGCACCACAAATCCAAAGTCGTCTCTAACCCAAAACACTCTTCTACTATGCGTGCTCACCACCAGCAAAACCCTAGCTCCGATGACCTGAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACTACCACCGCCACCACCAAACCTTCTTTCACTCCAATTCACGGTCGATATTGGATCCCTACTCCTCAACAAATCCTTATTGGGCCCACCCAGTTTTCTTGCACTGTCTGTAACAAAACGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAGTATAGGAAAGGAGCGGAGTCATTGAGAGGGTCAAAAGCAAACTCTTCAATGCTGAGGCTACCCTGCTATTGCTGTGAAGAGGGTTGCAAAAACAACATAAACTATCCAAGGTCAAAGCCACTGAAGGATTTCAGGACCCTCCAAACACACTACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAGTGCCATAAGCCATTTGCAGTGAGAGGAGATTGGAGAACGCACGAAAAGAATTGTGGGAAGCTTTGGTTCTGCGTGTGCGGTTCTGATTTCAAGCACAAGAGGTCCCTTAAAGATCATGTCCGTGCATTCGGCAATGGCCATGCTCCACACACCTTGAGTGAAGAAAGAGGGAATAATAATGAAGGTGGAGATGATGATGATGATGAGAGTGAAGTGGTTGTTGTTGGTTTTTCAAATAATACAACGTAG 861 0.4692 MQKTYSFSCISSCGSDSACLEADEVDNEDSISLSLGPPTPSLHHKSKVVSNPKHSSTMRAHHQQNPSSDDLSGVTVALHIGLPTTTATTKPSFTPIHGRYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGAESLRGSKANSSMLRLPCYCCEEGCKNNINYPRSKPLKDFRTLQTHYKRKHGGKPFECRKCHKPFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGNGHAPHTLSEERGNNNEGGDDDDDESEVVVVGFSNNTT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01374 286 MobiDBLite consensus disorder prediction 250 276 - -
Pumo3g01374 286 SUPERFAMILY beta-beta-alpha zinc fingers 95 137 IPR036236 -
Pumo3g01374 286 MobiDBLite consensus disorder prediction 29 71 - -
Pumo3g01374 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Pumo3g01374 286 SMART c2h2final6 163 195 IPR013087 -
Pumo3g01374 286 SMART c2h2final6 200 220 IPR013087 -
Pumo3g01374 286 SMART c2h2final6 115 137 IPR013087 -
Pumo3g01374 286 FunFam Zinc finger protein WIP2 169 251 - -
Pumo3g01374 286 MobiDBLite consensus disorder prediction 51 71 - -
Pumo3g01374 286 Gene3D Classic Zinc Finger 139 224 - -
Pumo3g01374 286 SUPERFAMILY beta-beta-alpha zinc fingers 185 220 IPR036236 -
Pumo3g01374 286 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Pumo3g01374 286 Gene3D Classic Zinc Finger 114 137 - -
Pumo3g01374 286 PANTHER ZINC FINGER PROTEIN WIP2 23 263 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01374 Pumo-Chr3 21769247 21770743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01374 27 259 C2H2 Transcription Factor Family AT1G13290 69.167 8.78e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01374 None None None