Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01368 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATTGCGACCAAAATAAAGAGTGCCTCTGGAACATTTGGTAAAGTTATATGGAAAAGCAATCCTTCCAGAGCTTGCCCAAATTGCCATCATGTTATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGACTACCTAAAGGCGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGCTGGAAATTCAAAACCTCACCCTTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGGATTTGTTATACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAGCGCTTCTCACTTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAAATATGTGGTCAGGATTTTGGTGATGTTCGCTGGCACAAAACTGGAAGGACTAAACCCTGTCATCTTGAATGGGGTTCAGAAAGGCTGTAA 504 0.4147 MAGPSWLVDKSRIATKIKSASGTFGKVIWKSNPSRACPNCHHVIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGAGNSKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGSASHFFHRAIKAYNTGSRKRRKICGQDFGDVRWHKTGRTKPCHLEWGSERL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01368 167 Pfam No apical meristem (NAM) protein 57 158 IPR003441 GO:0003677|GO:0006355
Pumo3g01368 167 Gene3D NAC domain 65 165 IPR036093 GO:0003677|GO:0006355
Pumo3g01368 167 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 158 IPR044799 GO:0003700
Pumo3g01368 167 ProSiteProfiles NAC domain profile. 56 167 IPR003441 GO:0003677|GO:0006355
Pumo3g01368 167 SUPERFAMILY NAC domain 41 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01368 Pumo-Chr3 21688048 21690695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01368 28 163 NAC Transcription Factor Family AT1G28470 52.817 1.49e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo3g01368 NAM 6.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01368 - - gmx:100787422 327.791