Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01356 ATGATGCCCCCTGAGCAAGAAACCACTATTGCACCAAACATTCCAGCCATCACAACCAGACCAGAGACCAGCTCGGTCCACCATGAATCATCAGAGGGTTCAAACACTAACAAAATCAAACCAAGTTTGGAATTGGATGATAATGGCGTTCCCGTGCAGCATCATACTCAGCCACCATCACCACCACCACCAAGATTCTCCGTTCTTCACCAATCCTTGCGCCCCATTACCCTCAAATTTGAAGACGTATCCTACACTATAACCTTCGAAAGCCAAAAGAAGAAGGGTTGCTGTGTCTTACGTAAAGAGTCAAAGCTAAGAAGAAAAGTCCTCACCGGCGTGACCGGAGTGGCGAACTCCGGCGAGTTAACGGCAATGCTGGGCCCCTCCGGGAGCGGCAAGACGACCCTCCTAACCGCCCTGGCCGGAAGACTCCCCGGAAAATTCTCCGGCACCATAACCTACAACGGCCACACCGACACCACTTTCGTGAAACGCAAGGTCGGGTTCGTGCCCCAAGACGACGTCCTCTACCCTCACCTCACGGTGTTGGAAACCCTAACCTACGCAGCGTTGCTGAGGCTTCCGAAGAGTTTGAGCAGAGAAGAGAAGAAGGAGCACGCGGAGATGGTGATTGCGGAGCTTGGCCTGACACGGTGTCGTAACAGCCCCGTCGGAGGGTGCATGGCTATGTTCCGTGGCATTTCGGGTGGGGAACGGAAACGGGTCAGTATCGGGCAGGAGATGTTGGTCAACCCGAGTTTGCTGTTCGTGGATGAGCCCACCTCGGGTTTGGACTCCACCACGGCCCAACTTATCGTGTCGGTGCTCCGCGGGCTCGCCCGGGCGGGTCGCACCATCATCACCACCATCCACCAGCCCTCCAGCCGGTTGTATAGGATGTTTGACAAGGTGGTTGTGTTGTCAGACGGGTACCCGATTTATAGCGGGCATGCGGGTCGGGTCATGGATTATCTTGGATCCGTTGGGTATGTCCCAGCTTTCAACTTCATGAACCCGGCAGATTTCCTACTTGACCTTGCTAATGGCATAGTTGCTGATGTTAAACATGATGATCAGATAGACCACCATGAGGATCAAGCTTCAGTCAAACAGTCCCTAATTTCATCCTTTAAGAAGAACTTATATCCTGCTCTTAAAGAAGACATTCACCAAAATAACAGTGACCCGTTGGCTTTTACATCAGGAACACCTAGACGTTCTGATAACCAATGGACCACTAGCTGGTGGGAGCAATTCAGGGTGCTTCTTAAGAGGGGTTTACAAGAGAGGAGGCATGAATCTTTTTCTGGCTTAAGAATTTTCCAAGTCTTGTCTGTATCCATTCTCTCAGGACTTCTGTGGTGGCACTCTGATCCTGCACATGTACAAGATCAGGTGGGACTCCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTCAATGCCATCTTTGCCTTTCCTCTGGAGAGGCCAATGCTAATAAAAGAAAGATCATCAGGGATGTACCAACTCTCTTCATACTATGTTGCCAGGATGGTGGGAGATTTACCAATGGAGCTAGTTCTTCCTACCATCTTTGTAACAATCTCCTACTGGATGGGTGGTCTCAAGCCTTCATTGGTCACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTCCTAGTCTCTCAAGGCATAGGCCTAGCACTTGGGGCCATTCTCATGGATGTGAAGCAGGCCACTACTCTAGCTTCAGTGACCATGCTGGTGTTTCTCTTGGCTGGTGGTTACTACATTCAGCAAATGCCTGCTTTCATAGCTTGGTTGAAGTACATTTCTTTCAGCCACTACTGCTATAAGCTACTGGTAGGAGTCCAGTACTCAATAAATGAGGTATACGAGTGTGGACCAGGGTTGCATTGTAGGGTAAGAGATTTTCCTGCCATAAAGTGTCTGGGGCTTGATGATACTATGTGGGGAGATGTGGCAGCATTGACTGTAATGTTGATTGGATACAGAGTTGTGGCATATCTAGCTTTGAGGATGGGGCAGCCTCACTGA 2052 0.4966 MMPPEQETTIAPNIPAITTRPETSSVHHESSEGSNTNKIKPSLELDDNGVPVQHHTQPPSPPPPRFSVLHQSLRPITLKFEDVSYTITFESQKKKGCCVLRKESKLRRKVLTGVTGVANSGELTAMLGPSGSGKTTLLTALAGRLPGKFSGTITYNGHTDTTFVKRKVGFVPQDDVLYPHLTVLETLTYAALLRLPKSLSREEKKEHAEMVIAELGLTRCRNSPVGGCMAMFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSVLRGLARAGRTIITTIHQPSSRLYRMFDKVVVLSDGYPIYSGHAGRVMDYLGSVGYVPAFNFMNPADFLLDLANGIVADVKHDDQIDHHEDQASVKQSLISSFKKNLYPALKEDIHQNNSDPLAFTSGTPRRSDNQWTTSWWEQFRVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDPAHVQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYQLSSYYVARMVGDLPMELVLPTIFVTISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPAFIAWLKYISFSHYCYKLLVGVQYSINEVYECGPGLHCRVRDFPAIKCLGLDDTMWGDVAALTVMLIGYRVVAYLALRMGQPH 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01356 683 FunFam ABC transporter G family member 22 98 329 - -
Pumo3g01356 683 Pfam ABC transporter 114 263 IPR003439 GO:0005524
Pumo3g01356 683 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 335 IPR003439 GO:0005524
Pumo3g01356 683 SMART AAA_5 120 313 IPR003593 GO:0016887
Pumo3g01356 683 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 40 674 - -
Pumo3g01356 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 328 IPR027417 -
Pumo3g01356 683 Pfam ABC-2 type transporter 292 355 IPR043926 GO:0140359
Pumo3g01356 683 Gene3D - 74 330 IPR027417 -
Pumo3g01356 683 CDD ABCG_EPDR 75 317 - -
Pumo3g01356 683 MobiDBLite consensus disorder prediction 11 42 - -
Pumo3g01356 683 ProSitePatterns ABC transporters family signature. 235 249 IPR017871 GO:0005524|GO:0016887
Pumo3g01356 683 MobiDBLite consensus disorder prediction 1 67 - -
Pumo3g01356 683 Pfam ABC-2 type transporter 418 624 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01356 Pumo-Chr3 21485154 21489964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01356 109 311 Calmodulin-binding Proteins AT2G36910 30.189 2.88e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01356 K05681 - gmx:100792991 1259.2