Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01352 ATGGCGAGGATCAAACCTCAGGCTCTGCTACAACAAAGCAAAAGGAAGAAGGGCCCTTCTCGGATAAGCGCCACAACTATTATATTTTATTTTTTGATTCTTGCCTTGCTTGGGTTTTTCCTGTTTTCTTCGTACAGACATTGGTCCAGCAGGTCAAGATTGCAATCAGAAAATCACTTGTCAGTCTCCGAGGGTGATAATACTTTTGTGGACTCAAAGAAATCTGACCTGCCTGGATATGCTGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGTCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTTTGTGATTCAGGCAGGGGATAAGCAAGGAACTGGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACGATTACTAGTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAACAAAGGATTTGATCTTTACATTACAACTGCACCAATACCAGATCTAAATGAGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAAGATGTTGTGCAGGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCGGGATACTTGATGTGACTCTTAAACAGAAGGTCTGA 699 0.3934 MARIKPQALLQQSKRKKGPSRISATTIIFYFLILALLGFFLFSSYRHWSSRSRLQSENHLSVSEGDNTFVDSKKSDLPGYAVLNTSKGSIIIELYKESAPEVVDEFIDLCQKGHFKGMLFHKVIKHFVIQAGDKQGTGATEDWNLRGKQHTITSMKHEAFMLGTSKGKHNNKGFDLYITTAPIPDLNEKIIVFGQVIKGEDVVQEIEEVDTDEHYKPKVSIGILDVTLKQKV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01352 232 SUPERFAMILY Cyclophilin-like 77 228 IPR029000 -
Pumo3g01352 232 CDD cyclophilin 82 225 - -
Pumo3g01352 232 Gene3D - 66 232 IPR029000 -
Pumo3g01352 232 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 77 228 IPR002130 GO:0000413|GO:0003755
Pumo3g01352 232 FunFam Peptidyl-prolyl cis-trans isomerase 67 232 - -
Pumo3g01352 232 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 82 226 IPR002130 GO:0000413|GO:0003755
Pumo3g01352 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
Pumo3g01352 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Pumo3g01352 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 175 187 IPR002130 GO:0000413|GO:0003755
Pumo3g01352 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Pumo3g01352 232 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01352 Pumo-Chr3 21453139 21459038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01352 79 228 U-box Gene Family AT5G67530 31.169 7.62e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01352 - - gmx:100781538 429.098