Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01351 ATGACTGAAGAAAGTGCTCCAAACACAGTTGCAACCTCTATTACCCCACTAAACTGGTGGTATCTCCAGGCAAATTCTCTTTCTAATTCCTGGAACGATACTAATAGCACATGGAACAACCAACCAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCACTCAAGCCTCACTGTTGAGTCCTCTCGCAGACTCATTGAGCCACCTGCTCCTTCCTCCACCGAGTTGATGGGAGAACATGCTTCGGATAATCAACTTTGGAGTCATGTTTTATCAGGTGTTGGATCAAACGGCGAGTTGCACAACAGCCAAGAAATCGGAGAGAACTTTCTGGATGCACTGTCATCAAAAAGCATGACAAGCACCATGTTTCAACCAGTGTGTGACTACCTGAAGAAACTTGATCATACAAGTTGGGAATATAGTGGTCCAGCTTCATTAAATAGCTTTGAGAAGCATTTAAATGGGTTCAGTGAGGCCATGATTGAGAATAATGAAAGGTTGACCAAGTTATCTAATCTTGTAAGCACTTGGTCTATTGCCCCACCAGACCCAGAAGTTAGTAGCCACTTTGATCCACAAACACACAACAACATGTCCTTGAGTTCTTCCATGGAGCACTTCCCACAATCTGAACACTTCAAGCAACCTTTTGGAGACTCCACATCATCATGCTCTCTTGGAGGAGCAAGTAGAAGCTCTGGAGTGTTCCCTAATTGCTATGATCATGACATGAAGGTCAAGCAAGAGTATCATCATGCAAGTGAAGTGCCAGGAGCTGTATTTGGAAAATCATTAAATGCAAATGGATTTAATAATAGCCTCTCAGTGGGAGATAGTTGCAAACTCTACCATGGGATGCCCAATATTTCTTCATGCACAAGAAATTTCTCAGATGTTATATCCTTCAATAATCGATTAGGAAGGTCAGTTATTGGAATCCATGCTCAGAAACCTAGCATGAAGTACCTGAACGTATCTGAACCAAAGAAGCAAGGTCTTCAGACACCATCACCGATAAGAACTAATGTTAATGGAAAAGGAGAGGGGACAACACGTGAAGTAAAGAAGAAAAGATCAGAAGAATCTTCGGATGCAATGTTGAAAAAGCCTAAACAAGATACATCAACAGCTTCTTCCTCAAAGGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGCTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCTTACTTGAAGGTTAATTCTCACAAGGATCCGTGGGGAAGCTTGGATAGAAAAGATAATAAGGAGGACACAAAGCTAGACCTTCGGAGCAGAGGTCTGTGTTTAGTTCCTACTTCATGTACTCCTCTAGTTTACAGAGAGAGTAGTGGACCAGATTACTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1527 0.4224 MTEESAPNTVATSITPLNWWYLQANSLSNSWNDTNSTWNNQPNPNSSSSCEEDISVSTSFTNASNHSSLTVESSRRLIEPPAPSSTELMGEHASDNQLWSHVLSGVGSNGELHNSQEIGENFLDALSSKSMTSTMFQPVCDYLKKLDHTSWEYSGPASLNSFEKHLNGFSEAMIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTHNNMSLSSSMEHFPQSEHFKQPFGDSTSSCSLGGASRSSGVFPNCYDHDMKVKQEYHHASEVPGAVFGKSLNANGFNNSLSVGDSCKLYHGMPNISSCTRNFSDVISFNNRLGRSVIGIHAQKPSMKYLNVSEPKKQGLQTPSPIRTNVNGKGEGTTREVKKKRSEESSDAMLKKPKQDTSTASSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKVNSHKDPWGSLDRKDNKEDTKLDLRSRGLCLVPTSCTPLVYRESSGPDYWTPAYRGCLYR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01351 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 401 452 IPR036638 GO:0046983
Pumo3g01351 508 MobiDBLite consensus disorder prediction 33 91 - -
Pumo3g01351 508 MobiDBLite consensus disorder prediction 341 361 - -
Pumo3g01351 508 MobiDBLite consensus disorder prediction 33 74 - -
Pumo3g01351 508 CDD bHLH_AtbHLH_like 401 443 IPR045239 -
Pumo3g01351 508 MobiDBLite consensus disorder prediction 382 396 - -
Pumo3g01351 508 MobiDBLite consensus disorder prediction 362 381 - -
Pumo3g01351 508 MobiDBLite consensus disorder prediction 340 397 - -
Pumo3g01351 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 386 435 IPR011598 GO:0046983
Pumo3g01351 508 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 185 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01351 Pumo-Chr3 21431966 21435337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01351 43 508 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 35.759 4.69e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01351 - - gmx:100527800 916.761