Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01349 ATGGGAAGAAAGGCCAATTGTGACAATCAATATGCTATGAATAGAGGTCCTTGGTCTGCTGAAGAAGACAAAATTCTCATGAACTACGTTCAAGTCCATGGAGAAGGAAAATGGAGAGAGCTTTCCAAAAGAGCTGGCTTGAAAAGATGTGGGAAGAGTTGTAGACTTCGGTGGCTGAATTATCTCAAGCCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATTATCAGACTACATAAGCTCTTAGGGAACAGATGGTCTCTAATTGCGGGACGCTTACCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCACAGGCACAAGCATAACAAAATTCCTAGCCATAACAACAACATTCCTATCAAATTAAGAATAGAATCTCCGGGGTGCTCAAAAAACTCCTTGGCTAATGTTCTTGATCCTACAAAATCCCCTCACCCAATGATGATTAAACCAAAATCAATGAGGTGTACAAAGGTTATGATGCCAGTCAATGATTCAGTCAACACAATGAATTTGATTACAACGAGCTGGGACAATCATAACCCTTCTGCAATATCCATGCCACAAGATGATCATAATCATTGCTTAACAGGTTTCCTCCAAGACCTTGACATTAGTGACTTGTTAATGCCGTATGAGGATGATTGTCGTTTTAATGGATATGCTTGTGTCGAAATACCCGAACATATTTTTGAAGATGAGACTTGGAGGCTTGATGATTCCATGGGTGAAGAAGCATGGTATGAGAATTGGAAGATTGACACCTATTTTTCACAAGAACAAGATATGGGTTTTTCTTCATTTTAA 852 0.3897 MGRKANCDNQYAMNRGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEHRHKHNKIPSHNNNIPIKLRIESPGCSKNSLANVLDPTKSPHPMMIKPKSMRCTKVMMPVNDSVNTMNLITTSWDNHNPSAISMPQDDHNHCLTGFLQDLDISDLLMPYEDDCRFNGYACVEIPEHIFEDETWRLDDSMGEEAWYENWKIDTYFSQEQDMGFSSF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01349 283 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Pumo3g01349 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo3g01349 283 FunFam Transcription factor TT2 71 138 - -
Pumo3g01349 283 Gene3D - 71 136 - -
Pumo3g01349 283 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 146 - -
Pumo3g01349 283 SMART sant 14 64 IPR001005 -
Pumo3g01349 283 SMART sant 67 115 IPR001005 -
Pumo3g01349 283 CDD SANT 72 113 IPR001005 -
Pumo3g01349 283 Gene3D - 15 67 - -
Pumo3g01349 283 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pumo3g01349 283 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pumo3g01349 283 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pumo3g01349 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Pumo3g01349 283 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo3g01349 283 CDD SANT 17 62 IPR001005 -
Pumo3g01349 283 FunFam MYB-related transcription factor 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01349 Pumo-Chr3 21363729 21365620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01349 7 117 MYB Transcription Factor Family AT3G13540 72.072 9.54e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g01349 Myb_DNA-binding 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01349 K09422 - gmx:100794570 531.176