Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01348 ATGGCGGCAGCTTCCTCATCCACTTCATTTCTGGAAATCAGAGAAGAAAGCCCTCAGATTACAACACACCATCAATCCTCCACAGTTGCTCCAACCACAGTGCCTCAAAAGAAAAGGAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAATCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAAAGAAAGGTTTATCTGTGCCCCGAGCCCACCTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAACACGGCGAGAAAAAGTGGAAGTGTGAAAAGTGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCACAAGAGAGTGCAAGATTCCCCAGTGGCCTAAACCCTTTGGGGACTCATTTGTTTGGCACAAACCACACTAGTTTAAGCCTATCCCAAGTGGGAACCCAACTTTCCCAAGTCCAAAATCAGAACCAAACAGCCACTAATAACAGCATTTTGCGCCTTGGCAGTGTTGGTGGTGCAGCAGCAAAATTTAAGCACTTGATCCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCCTCAGGTTTCTTCCTGAATGACAACAACACAAATCAAGCATTTGAAGAACACCAATCACAACAAGGACCATTGTTCTCAAGCAAGCAACTACAAGGCCTAATGCAACTCCAAGATCTTCATGGCAACACCAATAACTCCGATTCTTCATCAGTTGCTGCTCCTAATAATTCCAATCTTTTCAACCTCAGCTTCTTCCCAAGTAGCAACATTAGCACTGGCACCATAATCCCTGATCAATTCAACAACATAAGTGGTACTAGTGACCAAGGAACAACAACACCACCAGGTACTCTATGGCAATTCAATAGAAAACGTGTCATCCCCTCATGTAGGATCGAGTTTTTCTTCTATCTTTGGCAATTCAATAGAAAACGTGTCGTCCCCTCATATGTCTGCCACTGCGTTGCTTCAACAAGCTGCTCAAATGGGTTCAACCACAACCACCAACAACGGTTCTTCTTTACTTAG 1299 0.4488 MAAASSSTSFLEIREESPQITTHHQSSTVAPTTVPQKKRRNQPGTPNPDAEVIELSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARFPSGLNPLGTHLFGTNHTSLSLSQVGTQLSQVQNQNQTATNNSILRLGSVGGAAAKFKHLIPPLNQSSFGHSPQSMPSSGFFLNDNNTNQAFEEHQSQQGPLFSSKQLQGLMQLQDLHGNTNNSDSSSVAAPNNSNLFNLSFFPSSNISTGTIIPDQFNNISGTSDQGTTTPPGTLWQFNRKRVIPSCRIEFFFYLWQFNRKRVVPSYVCHCVASTSCSNGFNHNHQQRFFFT 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01348 432 Gene3D Classic Zinc Finger 47 114 - -
Pumo3g01348 432 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Pumo3g01348 432 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 327 IPR031140 -
Pumo3g01348 432 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pumo3g01348 432 FunFam protein indeterminate-domain 12-like 45 113 - -
Pumo3g01348 432 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Pumo3g01348 432 MobiDBLite consensus disorder prediction 1 43 - -
Pumo3g01348 432 SMART c2h2final6 107 137 IPR013087 -
Pumo3g01348 432 SMART c2h2final6 142 162 IPR013087 -
Pumo3g01348 432 SMART c2h2final6 66 88 IPR013087 -
Pumo3g01348 432 Gene3D Classic Zinc Finger 120 198 - -
Pumo3g01348 432 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Pumo3g01348 432 MobiDBLite consensus disorder prediction 1 50 - -
Pumo3g01348 432 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01348 Pumo-Chr3 21351995 21356479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01348 36 212 IDZ Gene Family AT2G02070 89.831 1.66e-116 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01348 zf-C2H2_jaz 2.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01348 K25870 - gmx:100780268 659.448