Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01334 ATGGGTGGGAGCGAGAGCTCGAAGGGTGTGGTTATGGGTCGTTTGGTTGAGTGCATCAAGGAGATTTCTGGGTTGCCAGAGTGTCAGAATTTTTGCAAGAAGGTGTATGGGAATTTGGTTCGCAGGGTGAAGCTGCTGAGTCCTCTCTTTGAGGAATTGAAGGATAGTGATGAGTCCCTCAGCGAGGAACAGCTTCAAAGCTTTGAGTCTCTCTTGGTTGATTTGGATTCAGCTAAGACCCTTTTGAAGGCTGTGAACCAAGGGAGTAAACTTTATCAGGCTATGCGGAGGAATGATACAGCAGATGAGTTCCAAAAAATAACTGAAAAAATTGAAGCTGTGCTCAGTGAAATTCCTTACAACAAACTTGAGATATCAGAGGAAGTTCGTGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATATACAACTAGACCTGGATATGGCAGTGGCACAAAAAGAAAAGGACCCTGATCCTGCTGTACTGAAGAGACTTTCTGAGAACTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACATGAATTGTTGATCACAAGCGGTGGAGAACTAGGTGACTCTCTTGAAATGATCACATCCCTTCTTAGCAAACTGAGGGACTGTGTGCTCACAGAAAATCCTGAAGTTGACACCGGTGAATGTGAAAAATTGTCAGTTAAGCACAGGTCTCCCGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAATTAATGAAAGATCCTGTAATTGTCTCCACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTGCATACAGCTCTTACCCCTAACTATGTTTTGAAGAGTCTGATTGCTTTGTGGTGTGAAAGCAATGGCATTGAGCTACCAAAGAAGCAAGGGAGCTGTAGAACAAAGAAATGTGGTGGAAGCAGTATTTCAGATTGTGATCGAACTGCTATTAGTGCTTTATTGGATAAACTAACGAGTAACGATATAGAACAGCAAAGGGCTGCTGCTGGTGAGCTCCGGTTGCTAGCTAAGAGGAATGCAGACAACAGAGTATGCATTGCTGAGGCAGGAGCAATACCGCCTCTTGTAGATTTGTTATCTTCTTCAGACCCTCGAACCCAGGAGCACGCTGTTACAGCACTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCTGGAGCCATACCGGATATTGTAGATGTACTGAAAAATGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGGTTCTAGACGAGAACAAGGTGCAAATAGGTGCAGCTGGAGCTATCCCTGCTCTAATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCTATCTTTAACCTATCTATTTATCAGGGAAATAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGCCCCACTGGTACAATTTCTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATATTGGCAATCCTTGCGAGCCACCATGAAGGCAGGGTGGCAATTGGTCAGGCCGAGCCAATTCCTATTCTAGTTGAGGTTATACGAACCGGATCTCCACGCAACCGAGAGAATGCCGCTGCTGTCTTGTGGTCACTATGCACCGGCGATCCACTGCAATTAAAACTAGCAAAAGAACATGGTGCAGAAGCAGCACTGCAGGAGTTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGCATATTGGAAAACTTGCAGCGAATGGAAGGGGATGATAATCAGCAAAATTCTTAG 1896 0.4399 MGGSESSKGVVMGRLVECIKEISGLPECQNFCKKVYGNLVRRVKLLSPLFEELKDSDESLSEEQLQSFESLLVDLDSAKTLLKAVNQGSKLYQAMRRNDTADEFQKITEKIEAVLSEIPYNKLEISEEVREQIELVHAQFKRAKAQTEFADIQLDLDMAVAQKEKDPDPAVLKRLSENLHLRTINDLRKESSELHELLITSGGELGDSLEMITSLLSKLRDCVLTENPEVDTGECEKLSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGGSSISDCDRTAISALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVAPLVQFLKDAGGGMVDEALAILAILASHHEGRVAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCTGDPLQLKLAKEHGAEAALQELSENGTDRAKRKAGSILENLQRMEGDDNQQNS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01334 631 Gene3D - 421 623 IPR011989 -
Pumo3g01334 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Pumo3g01334 631 MobiDBLite consensus disorder prediction 600 631 - -
Pumo3g01334 631 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Pumo3g01334 631 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Pumo3g01334 631 FunFam RING-type E3 ubiquitin transferase 345 461 - -
Pumo3g01334 631 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Pumo3g01334 631 CDD RING-Ubox_PUB 248 300 IPR045210 -
Pumo3g01334 631 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Pumo3g01334 631 SUPERFAMILY ARM repeat 343 620 IPR016024 -
Pumo3g01334 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Pumo3g01334 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Pumo3g01334 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Pumo3g01334 631 CDD MLKL_NTD 32 141 - -
Pumo3g01334 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Pumo3g01334 631 Gene3D - 340 420 IPR011989 -
Pumo3g01334 631 SMART arm_5 498 538 IPR000225 GO:0005515
Pumo3g01334 631 SMART arm_5 457 497 IPR000225 GO:0005515
Pumo3g01334 631 SMART arm_5 539 579 IPR000225 GO:0005515
Pumo3g01334 631 SMART arm_5 416 456 IPR000225 GO:0005515
Pumo3g01334 631 SMART arm_5 375 415 IPR000225 GO:0005515
Pumo3g01334 631 FunFam RING-type E3 ubiquitin transferase 462 630 - -
Pumo3g01334 631 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Pumo3g01334 631 PANTHER U BOX DOMAIN-CONTAINING 33 618 - -
Pumo3g01334 631 SUPERFAMILY RING/U-box 246 322 - -
Pumo3g01334 631 Gene3D - 11 120 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01334 Pumo-Chr3 21183601 21188438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01334 11 624 U-box Gene Family AT3G54850 66.775 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01334 - - gmx:100777452 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01334 3 21183601 21188438 Pumo3g01334 3 21183601 21188438 ECH