Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01316 ATGAGTTTCAAGACTAAGGCGGAGTTACTGTTGCATAAACGCAACCTTTGCCCACATGAGGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCTTGGGCAAGGACAGAGCATATACGCGTACATACCGGGGAGAAGCCTTATCACTGCAAGGTCGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACGGGGCACCATGTGAAACCTCCTGCTTGA 324 0.4877 MSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPPA 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01316 107 Gene3D Classic Zinc Finger 71 102 - -
Pumo3g01316 107 Gene3D Classic Zinc Finger 13 44 - -
Pumo3g01316 107 FunFam Probable lysine-specific demethylase ELF6 42 71 - -
Pumo3g01316 107 SUPERFAMILY beta-beta-alpha zinc fingers 2 52 IPR036236 -
Pumo3g01316 107 ProSitePatterns Zinc finger C2H2 type domain signature. 77 101 IPR013087 -
Pumo3g01316 107 ProSitePatterns Zinc finger C2H2 type domain signature. 47 69 IPR013087 -
Pumo3g01316 107 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 106 IPR013087 -
Pumo3g01316 107 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Pumo3g01316 107 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Pumo3g01316 107 Gene3D Classic Zinc Finger 45 70 - -
Pumo3g01316 107 SMART c2h2final6 75 101 IPR013087 -
Pumo3g01316 107 SMART c2h2final6 15 39 IPR013087 -
Pumo3g01316 107 SMART c2h2final6 45 69 IPR013087 -
Pumo3g01316 107 SUPERFAMILY beta-beta-alpha zinc fingers 55 105 IPR036236 -
Pumo3g01316 107 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 74 IPR013087 -
Pumo3g01316 107 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 2 100 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01316 1 103 C2H2 Transcription Factor Family AT5G04240 74.757 1.33e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01316 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01316 - - gmx:100799861 241.891