Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01314 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCACTGGCCCCGGAATTTCGCCCTACAGACACTGAATTTGCTGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATCCCACCGTTGCCCAAACCTTCAAAAAAATATGTTTTTTCCAATTTGAATAGGTCACTCTTGAAGTGCCCTGATTTGGGTCCAGATAATAGTTCATTAGGTGTTTGTAATTCATCAAAAACCGGTTCTGGAGATGGTAGTAGTGATGGGGTGTTGCGAGCCGTGTTTACTACAAGGCATCAAGAACTAGGGCAGAATCAGAGTGTGAAAAAGGCCAAAGGGACAGTTCAGAATCCACTGTCAGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCAAAGTCTTTTGCGAAAAGCGTGCTAGGTTCGGTGAAAGATGTTTCTCCTCTGGTTATAGAGTCTCTGTTTTGGAAGGCAACTTTAGAGAAGCCTATATATGTGGAGTATGCCAATGATGTGCCTGGGTCTGCTTTTGAAGAGTCCAAGGGTCAATTTCATTATAGTCATAGAAGGCAAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGATCTGAGTGTAAACAAACTGAAATGGGTTGCATAAGAGATACCCAAACTGATGAGACTAAGGTTGCTTCTGTCCAAAGTCATGCAGACACTTGTGTACAGATGAACAAATCAGCTACTACCGTGTCAACATTTTCATCAAATGATGATTCACAATCTTCTAAGGAAAAGAGTTCAGATACCAGCAATGAAATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCACTAACACGTTTTATGCCGGATGATATTCCTGGCGTCACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATGCTGTTCCCGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCAACGAGGGTTATGGTGGTAATATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACTCAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGTAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGTGTGCGTAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCATTTATAGAAGACATGCTGCAGGAAAACAAGCTGCTATCCATTCTTCTTGGAAAGGAAGCAACTAAAAAAGCTATTTTATGGAATGCTGATTTACTGCCTGATTCTAGCAAAGATTTTCAGTTGCCTGATTTAACTTCTACTGGAACCTCTATGGCAGACATGTCAAATATTAGTTCTGCAGAAAAGAGTAGTCATTATCTGCTTGATGAGATGAGTTTGTATATGGAGAATTTGACTAATTTAGATCTTGGTGGTGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACTGAGAAATTGATAATGGAACTTCTTCCTGATAATCATCATCTAGTTCAAGTTTCCTCTCCGGACTCTACTGCTTGCGTTCATAGTTCCATCTCAAGGGATCTTTCTGTTTCTGAACTTTCATCAGTAAAGGAGTTGCCAGATCAATCATTAAACAAGTGCAATAAATGTTGGAACACCTCCAGTAAGTTTTTGAGGCCACGGATTTTCTGCCTGGAGCATGCTGTTCAAATAGTTGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGGGCAGTTGCGGAAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACTGCATCCCCAGAAAATTGA 2289 0.4124 MGSVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEAANFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLGPDNSSLGVCNSSKTGSGDGSSDGVLRAVFTTRHQELGQNQSVKKAKGTVQNPLSGVHKQVWQSGEVYTLEQFESKSKSFAKSVLGSVKDVSPLVIESLFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRQRKRTYYKSRLDRSECKQTEMGCIRDTQTDETKVASVQSHADTCVQMNKSATTVSTFSSNDDSQSSKEKSSDTSNEMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRNEGYGGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEATKKAILWNADLLPDSSKDFQLPDLTSTGTSMADMSNISSAEKSSHYLLDEMSLYMENLTNLDLGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLIMELLPDNHHLVQVSSPDSTACVHSSISRDLSVSELSSVKELPDQSLNKCNKCWNTSSKFLRPRIFCLEHAVQIVEMLQSKGGANVLIICHSDYQKIKAHARAVAEEIHSAFDYNEVPLDTASPEN 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01314 762 SUPERFAMILY Clavaminate synthase-like 294 459 - -
Pumo3g01314 762 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Pumo3g01314 762 SMART JmjN_1 15 55 IPR003349 -
Pumo3g01314 762 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 748 - -
Pumo3g01314 762 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Pumo3g01314 762 SMART cupin_9 293 462 IPR003347 -
Pumo3g01314 762 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Pumo3g01314 762 Gene3D Cupin 9 466 - -
Pumo3g01314 762 MobiDBLite consensus disorder prediction 264 293 - -
Pumo3g01314 762 Pfam jmjN domain 17 50 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01314 Pumo-Chr3 20854592 20864400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01314 1 761 C2H2 Transcription Factor Family AT5G04240 59.021 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo3g01314 JmjC 1.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01314 - - gmx:100819845 1433.7