Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01310 ATGGAATATTCAAAGGAAAACTATAGCAGCAGCGACCCACTTAACTGGGGCATTGCTGCGGATGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAGCGCATGGTGGAGGACTACCGTAACCCCGTGGTCATGTTAGGTGGCAAGAGTCTCACCGTGTCTCAGGTGGCCGCGGTTGCCACCCGCCACAACCGCGGCGTGACGGTGGAGCTGGCCAAGGAGACCCGCCACGGTGTCAAGGCCAGCAGTGATTGGGTGATTGATAGCATTGTCAAGGGCACTGATAGCAATGGAATCACCAGAGGGTTTGGTGCAACCGCACACAGGAGAACCAACCAAGGTGGTGCTCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGCATTTTTGGCAATGGCACAAAGTCTTGCCACACGTTACCTAACTCGGTCACAAGGGCAACCATGTTGGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGCATCAGATTTGAAATCATGGAGGCCATCACCAAGTTTTTGAACCATAACATAACCCCATGCCTCCCTCTTCGTGGCACAATCACTGCATCAGGTGACTTGATCCCTTTAGCATATGTTGCTGGCCTCTTGATTGGAAGGCCAAACTCCAAGTCTATTGGACCTAATGGACAAGTTCTCACAGCAGAAGAGTCCTTTCAACTAGCTGGAATTAATGGTGGTTTCTTTGAGTTACAACTTAAAGAGGGTTTGGCATTAGTTAATGGCACTGCAGCGGGATCTGGCTTGGCTTCCATGGTTCTTTTTGAGGCAAACTTACTTCTTGTCCTCTCAGAAGTCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACTCATAAATTGAAACACCACCCTGGCCAAATTGAGGCTGCTGCTATCATGGAACATATATTAGATGGAAGCTCATATGTTAAAGAAGCACAAAAGTTACATGAGATTGATCCACTTCAAAAGCCAAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATCGAAGTAATTAGACATGCAACAAAGATGATTGAAAGGGAGATAAACTCCGTAAATGATAACCCCTTGATTGATGTTTCAAGGAATAAGACACTTCAAGGAGGAAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCAATTGCAAAATTGATTTTTGCTCAATTCTCTGAACTTGTGAATGACTTCTACAACAACGGTTTGCCTTCAAATCTAACAGCTAGTCGTAACCCAAGCTTGGATTATGGCTTCAAAGGGGCTGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATATCTTGCCAATCCTGTCACCACTCATGTGCAGAGTGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGCTTAATTTCCTCTCGAAAGACAGATGAAGCAATAGACATATTGAAGCTCATGTTATCCACTTTTTTGGTTGCCTTATGTCAAGCCATTGATCTAAGGCATTTAGAGGAAAACTTGAAGAACAATGTCAAGAATATTGTAAGTCAAGTGGCCAAAAGGGTTTTCACAATAGGTGTCGATGATGAGTTGCATGCTTTTAGGTTTTGTGAGAAGGACCTACTCAAAGTTGTTGACCGTGAATATATCTTTGCTTACATTGATGACCCTTGCTGTGCAACCTACCCTCTAATGCAAAAGCTAAGATTAGTCTTAGTTGATCATGCATTGCAAAATGGTGACAATGAGGCAAATTCAAGTACCTCAATTTTCCAAAAAATAGGATCCTTTGAAGAAGAGCTCAAGGCCCTTTTGCCTAAAAAGGTGGAAAGTGCTAGGATTGAAGTTGAGAATGGAAATCCCGCTATTCCTAACCGTATTAAGGAATGCAGGTCTTATCCACTATACAAGTTTGTGAGAGAAGATTTAGGCACAACTTTGCTGACAGGTGAGAAAGTTAGGTCTCCTGGTGAGGAATGTGATAAAGTATTTATTGCATTATGTGAAGGGAAGTTTATTGACCCTATGTTGGACTGTCTAAAGGAGTGGAATGGTGCTCCTCTACCAATATGCTAA 2115 0.4307 MEYSKENYSSSDPLNWGIAADALKGSHLDEVKRMVEDYRNPVVMLGGKSLTVSQVAAVATRHNRGVTVELAKETRHGVKASSDWVIDSIVKGTDSNGITRGFGATAHRRTNQGGALQNELIRFLNAGIFGNGTKSCHTLPNSVTRATMLVRINTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLIPLAYVAGLLIGRPNSKSIGPNGQVLTAEESFQLAGINGGFFELQLKEGLALVNGTAAGSGLASMVLFEANLLLVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKTLQGGNFQGTPIGVSMDNTRLAIASIAKLIFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTDEAIDILKLMLSTFLVALCQAIDLRHLEENLKNNVKNIVSQVAKRVFTIGVDDELHAFRFCEKDLLKVVDREYIFAYIDDPCCATYPLMQKLRLVLVDHALQNGDNEANSSTSIFQKIGSFEEELKALLPKKVESARIEVENGNPAIPNRIKECRSYPLYKFVREDLGTTLLTGEKVRSPGEECDKVFIALCEGKFIDPMLDCLKEWNGAPLPIC 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01310 704 Gene3D - 3 250 IPR024083 -
Pumo3g01310 704 FunFam Phenylalanine ammonia-lyase 251 530 - -
Pumo3g01310 704 Gene3D Fumarase/aspartase (Central domain) 251 699 - -
Pumo3g01310 704 FunFam Phenylalanine ammonia-lyase 517 638 - -
Pumo3g01310 704 PANTHER HISTIDINE AMMONIA-LYASE 10 704 IPR001106 -
Pumo3g01310 704 FunFam Phenylalanine ammonia-lyase 3 250 - -
Pumo3g01310 704 Pfam Aromatic amino acid lyase 50 529 IPR001106 -
Pumo3g01310 704 Gene3D - 517 638 IPR023144 -
Pumo3g01310 704 SUPERFAMILY L-aspartase-like 12 704 IPR008948 GO:0003824
Pumo3g01310 704 CDD PAL-HAL 48 514 IPR001106 -
Pumo3g01310 704 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 186 202 IPR022313 GO:0016841
Pumo3g01310 704 NCBIfam phenylalanine ammonia-lyase 12 694 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01310 Pumo-Chr3 20776756 20780191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01310 11 704 Monolignol Biosynthesis Gene Families AT3G53260 79.395 0.0 1175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01310 K10775 - gmx:100801470 1264.6