Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01309 ATGATAATCCCCTTGATTGATGTTTCAAGGAATAAGGCACTTCATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCAATTGGGAAACTTATGTTTGCCCAATTCTCTGAACTTGTGAATGACTTCTACAATAATGGTTTGCCTTCAAATCTAACAGCCAGTCGCAACCCAAGCTTAGATTATGGATTCAAAGGCGCTGAAATAGCAATGGCGTCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAGAGTGCTGAGCAACATAACCAAGACGTGAACTCTTTAGGTTTAATTTCTTCAAGAAAGACAGCTGAAGCAATAGATATATTGAAGCTCATGTCATCCACTTTCTTAATTGCTTTGTGCCAAGCCATTGATTTGAGGCATTTGGAAGAAAACTTGAAGAACACCGTTAAGAATACAGTTAGTCAAGTGGCCAAAAGAGTTCTCACAGTTGGCATCAATGGTGAGTTACATCCTTCTAGGTTCTGTGAGAAGGACTTGCTCAAAATTGTTGATCGCGAGTATGTCTTTGCTTACATTGATGACCCCTGTAGTGCAACCTACCCTCTGATGCAAAAGTTGAGATTAGTCCTAGTTGATCATGCATTGCAAAATGGTGACAGAGAGGCGAATTCAAGTACCTCAATTTTCCAAAAGATAAGTGCCTTTGAGGAAGAGCTCAAGGCCCTTTTGCCCAAAGAGGTAGAAAGTGCTAGGATTGAAGTTGAGAATGGAAATCCTGCTATTCCTAACCGAATTAAGGAATGCAGGTCTTACCCATTATATAAGTTTGTGAGAGAAAATTTGGGTACTAGTTTGCTAACAGGTGAGAAAGTCAGGTCACCAGGTGAGGAATGTGATAAGGTATTTACTGCATTGTGTGAAGGGAAGTTTATTGATCCTATGTTGGATTGTCTAAAGGAGTGGAATGGTGCTCCTCTACCAATATGTTAA 1008 0.4067 MIIPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTVGINGELHPSRFCEKDLLKIVDREYVFAYIDDPCSATYPLMQKLRLVLVDHALQNGDREANSSTSIFQKISAFEEELKALLPKEVESARIEVENGNPAIPNRIKECRSYPLYKFVRENLGTSLLTGEKVRSPGEECDKVFTALCEGKFIDPMLDCLKEWNGAPLPIC 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01309 335 PANTHER HISTIDINE AMMONIA-LYASE 4 335 IPR001106 -
Pumo3g01309 335 NCBIfam phenylalanine ammonia-lyase 4 325 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pumo3g01309 335 Pfam Aromatic amino acid lyase 4 158 IPR001106 -
Pumo3g01309 335 Gene3D Fumarase/aspartase (Central domain) 4 202 - -
Pumo3g01309 335 Gene3D Fumarase/aspartase (Central domain) 217 335 - -
Pumo3g01309 335 SUPERFAMILY L-aspartase-like 4 335 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01309 Pumo-Chr3 20761697 20762704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01309 4 335 Monolignol Biosynthesis Gene Families AT3G53260 85.542 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01309 K10775 - gmx:100801470 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03234 3 59699905 59704139 Pumo3g01309 3 20761697 20762704 ECH
Pumo3g01309 3 20761697 20762704 Pumo3g01309 3 20761697 20762704 ECH