Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01306 ATGGGAAGCAAGTGGAAGAAAGCCAAGGTGGCGCTTGGTCTCAATCTCTGCATGTTCGTCCCCAGAACCTTAGACGACGATTCGCCGCCGCACACGGTGGTTTCCGAGCGCCTCTCCGACGCCGCTCTCCTCTCTCCGGCCAACTGGGCCACCACCTCTTCCCGGCCAACCACGCCGGTTTCCTCTTTTCACGGTTTGAAGCTCTCCAAAAGTAGCAGCAAATCATCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAGCAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGAAACCAAATATGCCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCATTATCAGGTCCCAGTTTGGATCCTATCCCTGGCAGAGTTTCACCAAGTCCAATCAATTGGCCCCAAAACGATGCTTTGATGGCAGTAGTCCACCGTCTACCTCTACCTCATCCTCACCGAGATTTGAATAGGAGGCATGTTGTGCCACTTTATCAAGCTTCTGAGCCGGGCATATTTGATGATGACGAATCCTTAAATCATCAAAATGCATTTTCTGAGAGAAGCCCTTGCAATAAGAATACTGAAGATACTGATGCTGCTAGAGCAATGGAGATTAAAACGTTCCCAGAAGTATCTGCTGCTCCAGGATCCAAGACTTTTTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTACTGCTGCTGCAGCAGCAGCTGCGGCCAAAAGACAAAACCTTAGTAGAAACCAGGCTAACTTGGCCCAGATTTCTCAGACTCCACGTGCCCCTGTTGACTTGGTCACTGTGCTTGATGTCAGTGGTAGCATGGCTGGAACTAAGCTTGCACTACTGAAAAGAGCTATGGGATTTGTCATACAAAACCTCGGCTCTAACGACCGGCTTTCTGTTATTGCCTTCTCTTCCACAGCTCGTCGCCTCTTTCCCTTGTGCAGAATGACTGATTCTGGGCGGCAGCAGGCATTGCAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATCGCCGAAGGGCTGAGAAAAGGTGCCAAGATAATGGAAGATCGAAAGGAAAAGAATCCAGTTGCCAGTATTATACTGTTGTCCGATGGCCAAGATAATTACACTGTCAATGGCTCTGGAACTAACCAGCCTCATCCAAATTACCAGTTTCTTCTGCCCACTTCTATCAGTGGGGGTGATAATTCAGGATTTCAAATTCCTGTGCATGCTTTTGGATTTGGTGCAGATCATGATGCTTCATTAATGCACTCAATTTCAGAAATTTCTGGTGGCACATTTTCTTTCATCGAGACTGAAGCTGTGTTACAGGATGCATTTGCACAATGCATCGGTGGACTTACTGAGCGTCGTTGTTCAGGAGCTGCAAGTGGGAATTGA 1452 0.469 MGSKWKKAKVALGLNLCMFVPRTLDDDSPPHTVVSERLSDAALLSPANWATTSSRPTTPVSSFHGLKLSKSSSKSSKQTCSICLTKMKQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGPSLDPIPGRVSPSPINWPQNDALMAVVHRLPLPHPHRDLNRRHVVPLYQASEPGIFDDDESLNHQNAFSERSPCNKNTEDTDAARAMEIKTFPEVSAAPGSKTFSNFTVLVHLKATAAAAAAAAKRQNLSRNQANLAQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVNGSGTNQPHPNYQFLLPTSISGGDNSGFQIPVHAFGFGADHDASLMHSISEISGGTFSFIETEAVLQDAFAQCIGGLTERRCSGAASGN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01306 483 CDD vWA_C3HC4_type 281 455 - -
Pumo3g01306 483 ProSiteProfiles VWFA domain profile. 282 468 IPR002035 -
Pumo3g01306 483 SMART ring_2 80 123 IPR001841 -
Pumo3g01306 483 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Pumo3g01306 483 Pfam Ring finger domain 79 124 IPR001841 -
Pumo3g01306 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Pumo3g01306 483 SUPERFAMILY vWA-like 277 468 IPR036465 -
Pumo3g01306 483 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 78 472 - -
Pumo3g01306 483 MobiDBLite consensus disorder prediction 50 71 - -
Pumo3g01306 483 CDD RING-H2_WAVH2 78 129 - -
Pumo3g01306 483 Pfam von Willebrand factor type A domain 282 465 IPR002035 -
Pumo3g01306 483 SMART VWA_4 280 467 IPR002035 -
Pumo3g01306 483 SUPERFAMILY RING/U-box 76 130 - -
Pumo3g01306 483 Gene3D von Willebrand factor, type A domain 282 469 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01306 Pumo-Chr3 20704409 20707605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01306 69 125 C3H Transcription Factor Family AT1G57730 40.351 6.88e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01306 - - gmx:100818239 884.404