Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01298 ATGAACCTCATTTCCCCTGCCTCCTCTTTTGTTGGGGAGAACATGCAGCCTAATGTCATATCTTCCAAGGCCTCTTCAGATTCTGAGAATTTTGCCGAGTCTCAACTTGTTCCCAAGATGCCAAAGCAAGCCTCTGGGGAGCCTAAGAAGAAAAAGAAAGTGAAGCTGCCACTTCCAGTAAGTCCAGCTGATAGCAATCAGAATGCCGCACAACCGGTTAGGAAATGTATGCATTGTGAGATAACAAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCTGAATACCGGCCTGCTGCAAGTCCAACTTTTTGCCCATCCGTGCACTCCAATTCTCATAAGAAGGTCCTGGAAATGAGATGCAGGGGCATTGACAAATCTGGTTTTGCAATCAATTCAGCTGCCTCACCTGAACTCATTCCAAACACTAACAGCAGCCTTACCTTGGAGTACATGTGA 513 0.4795 MNLISPASSFVGENMQPNVISSKASSDSENFAESQLVPKMPKQASGEPKKKKKVKLPLPVSPADSNQNAAQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRGIDKSGFAINSAASPELIPNTNSSLTLEYM 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01298 170 MobiDBLite consensus disorder prediction 1 33 - -
Pumo3g01298 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 74 133 - -
Pumo3g01298 170 CDD ZnF_GATA 75 132 IPR000679 GO:0006355|GO:0043565
Pumo3g01298 170 PANTHER GATA TRANSCRIPTION FACTOR 26 139 - -
Pumo3g01298 170 SMART GATA_3 70 120 IPR000679 GO:0006355|GO:0043565
Pumo3g01298 170 MobiDBLite consensus disorder prediction 1 73 - -
Pumo3g01298 170 Gene3D - 71 120 IPR013088 GO:0006355|GO:0008270
Pumo3g01298 170 ProSiteProfiles GATA-type zinc finger domain profile. 70 106 IPR000679 GO:0006355|GO:0043565
Pumo3g01298 170 Pfam GATA zinc finger 76 109 IPR000679 GO:0006355|GO:0043565
Pumo3g01298 170 ProSitePatterns GATA-type zinc finger domain. 76 101 IPR000679 GO:0006355|GO:0043565
Pumo3g01298 170 FunFam GATA transcription factor 65 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01298 Pumo-Chr3 20637620 20638132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01298 32 160 C2C2-Gata Transcription Factor Family AT3G54810 50.000 1.57e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo3g01298 GATA 2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01298 - - gmx:100815693 332.028