Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01297 ATGTTTAAGGTTATGGATTGCATGGAGAGGGGCTCAGAGAGGTGTTTAGATTCTCAACTGTGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCAGAACACGCTCATGGGAAGGTAGATTTCGGCCAAACCCGTGTTCCACCACTCATCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACGGATGAGGTGTATGTCAAAATGAGGCTCACCCCTTTGAGGGAACATGAGTTGGATTTGGAAGATGATTGCTTCTTGGGGAACAATGGAGGAGTTGAGGGTCAAGAGAAGCCTCCCACTTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGGTTTTCTGTGCCACGTTACTGTGCAGAAACCATCTTCCCTAGGTTGGATTATTCAGCTGAGCCTCCGGTTCAGACCATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCACATCTATAGAGGGACACCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGACTCTATTGTGTTTCTGAGGGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGAGGGACTGAGTTCTCTTCTGGGTGGAACCCTCTCTTTGGTGGGGGTTCTGGTGGCTTCTTGTGTGGGAGTGAGAGCAATTTGGTGAGTGGTGCAAAAGGTGGTGGTGATGAGATGGTGGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCTGTGACTTGTGCTGTTAATGGAAGGCCCTTCGAGGTTGTGTACTATCCAAGGGCTAGCTCACCGGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGCAGATCCTATCCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAGCCAGATTTACTTCAAAATGTCAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCAAACATGCCTACCTTCAATCTCTCTGCCTACTCACCTCCTAGAAAGAAACAACGTTTTCTACAGGACCCTTATTTTCAAGTCATAAACCAACTCCCAATGCCATCATTCTCTAGCAACCATCTCAATTATACCAACTCTCTTTGTACCATTCAAGATAATAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTACCTCCATCTGATTTTCCCTTCAACAAGCTCCCAGCAGACATGCTTCTAGGTGGGTTCTCAAGGCTTGAACATGCAGCACAACCTATTAGGCCTCCTTGTGGAACCTATAAGAACAACACTACTACTAAGGCCAATGTTGACATATCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAATTTTAAGGAATCCAATGAAACAAAAGCACCCCACATCTTGTTATTTGGAAAACTCATTCATACTGAGCAAAAGAGTTCAAACACTTGTTCTGCTAGTACTACTGGGAATAGTGTGTCTGAGGGGAATTCACTCAAGACATCAAATGCTTCTGATGGCCTAGGTTCTGGTTTGCATCAAGGTAGCCCAATTGAGAACAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTTGGAACCGACAATGTTAACACATTATGTATTGCTTTATAA 1824 0.4633 MFKVMDCMERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLIPCRLSAMKYMADPDTDEVYVKMRLTPLREHELDLEDDCFLGNNGGVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEFSSGWNPLFGGGSGGFLCGSESNLVSGAKGGGDEMVGRVAAESVVEAVTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLQDPYFQVINQLPMPSFSSNHLNYTNSLCTIQDNNSSAGIQGARHAQFGLPPSDFPFNKLPADMLLGGFSRLEHAAQPIRPPCGTYKNNTTTKANVDISCLLTVGNPGQNFKESNETKAPHILLFGKLIHTEQKSSNTCSASTTGNSVSEGNSLKTSNASDGLGSGLHQGSPIENNSDGGSPWYKDQHKSDLGTDNVNTLCIAL 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01297 607 SMART B3_2 120 222 IPR003340 GO:0003677
Pumo3g01297 607 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Pumo3g01297 607 Gene3D - 118 222 IPR015300 -
Pumo3g01297 607 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Pumo3g01297 607 Gene3D - 315 388 - -
Pumo3g01297 607 SUPERFAMILY DNA-binding pseudobarrel domain 113 221 IPR015300 -
Pumo3g01297 607 CDD B3_DNA 119 220 IPR003340 GO:0003677
Pumo3g01297 607 FunFam Auxin response factor 118 222 - -
Pumo3g01297 607 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 560 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo3g01297 607 MobiDBLite consensus disorder prediction 539 593 - -
Pumo3g01297 607 FunFam Auxin response factor 315 388 - -
Pumo3g01297 607 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo3g01297 607 MobiDBLite consensus disorder prediction 539 586 - -
Pumo3g01297 607 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01297 Pumo-Chr3 20615545 20618634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01297 1 593 B3 DNA Binding Superfamily AT4G30080 57.333 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo3g01297 B3 2.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01297 - - gmx:100803053 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01297 3 20615545 20618634 Pumo3g01297 3 20615545 20618634 ECH