Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01289 ATGGCGAAGGACGTTGAGGTTGCTGAGCGTGGCTCCTTCACTGGGAAGGACTACCATGACCCTCCACCAGCACCACTCATTGATGCTGAGGAGCTCACAAAGTGGTCCTTTTACAGGGCTCTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTCTACATTACTGTGCTCACAGTCATAGGGTACAAGCACCAGACTGACCTCAAGGAACATGGTGATGTCTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGGATTTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGTGTCTTTGATCCGAGCCATCATGTACATAGTGGCTCAGTGCTTGGGTGCTATCTGTGGAGTTGGGTTGGTGAAGGCCTTCCAAAAGTCTTACTTCAACCAGTATGGTGGTGGGGCTAATTCCCTCGCTGATGGGTACAGCACAGGTACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTATACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACTGGAACTGGCATCAACCCTGCTAGGAGTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCCTGGGATGACCATTGGATCTTTTGGGTAGGACCATTTGTTGGGGCAGCCATTGCAGCCTTCTACCACCAGTTCATCTTAAGAGCAGGTGCAGCTAAGGCCCTTGGATCATTCAGGAGTAACCCCCATGTTTGA 864 0.5046 MAKDVEVAERGSFTGKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKHQTDLKEHGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYIVAQCLGAICGVGLVKAFQKSYFNQYGGGANSLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQDKPWDDHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSNPHV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01289 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 281 IPR034294 -
Pumo3g01289 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Pumo3g01289 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Pumo3g01289 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Pumo3g01289 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g01289 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01289 Pumo-Chr3 20453623 20456530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01289 1 287 Major Intrinsic Protein MIP AT2G37170 83.972 5.77e-180 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01289 K09872 - gmx:100817292 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03048 5 78518517 78521284 Pumo3g01289 3 20453623 20456530 ECH
Pumo3g03218 3 59460992 59462889 Pumo3g01289 3 20453623 20456530 ECH
Pumo3g01289 3 20453623 20456530 Pumo3g01289 3 20453623 20456530 ECH