Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01271 ATGATGGGCTATCCTTCCAGATTCTATCTTGTTTTGCTTTTGTCCATTTGTGGGGTGGTTTTTTCTTTAGCTTCCCCCATTGAAGATCAGAAGAGAGATAGAATTACTCAGCTTCCAGGGCAGCCAATGAATGTGGGGTTTGCTCAGTATTCTGGCTATGTGACTGTGAATGAGCAAAGTGGGAAAGCACTGTTTTACTGGTTGGTGGAGGCACCAGTGAGGCGTGGACCGAGGTCAAGGCCACTAGTGTTGTGGCTCAATGGGGGCCCTGGATGTTCCTCAATTGCTTATGGTGCATCTGAGGAAATTGGTCCTTTTCATATTAGGCCTGATGGCAAGTCACTTTACTTGAACCCTTATGCCTGGAACAATTTGGCAAATATACTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCATATACCAATAAGACAACAGATCTGTATACATTTGGTGACAAGAAAACAGCTGAAGATGCATATACTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAACTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGAATCAAGAATCCAGTTATAAATTTTAAGGGATTTATGGTTGGTAATGCTGTTACTGATGATTATCATGATTATATTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCAGATTCCACATATAGGATGCTAAGAATTGCCTGCAATTTTGGGTCCTCTCAGCATCCATCAGTGCAATGCATGCAGGCTCTCAGAGTTGCAACTTTGGAGCAGGGAAACATTGATCCATATAGCGTTTATACACAGCCTTGTAACAATACAGCATCACTCAGACGCGGCTTGAAGGGGCGCTATCCATGGATGTCTCGAGCATATGATCCATGTACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTAACTGGGATTCCTTATGCATGGAAAGCATGCAGTGATATTGTTGGGAACTATTGGACTGATTCTCCATTATCCATGCTTCCTATATATCAAGAACTTATTAGTGCTGGTCTCCGAATATGGGTCTACAGTGGAGACACTGATGCAGTGGTTCCAGTGACTGCTACTCGATATTCAATTGATGCCTTGAAGCTACCTACCATCATCAATTGGTACCCTTGGTATGATAATGGCAAGGTTGGTGGGTGGAGTCAAGTTTATAAAGGGCTGACATTGGTCACAGTAAGAGGAGCTGGACATGAGGTTCCTCTTCATAAGCCCCGCCAGGCATTCATTCTTTTTAGGTCATTCTTGGAGAACAAGTCCATGCCATCCACAAGTTAG 1386 0.425 MMGYPSRFYLVLLLSICGVVFSLASPIEDQKRDRITQLPGQPMNVGFAQYSGYVTVNEQSGKALFYWLVEAPVRRGPRSRPLVLWLNGGPGCSSIAYGASEEIGPFHIRPDGKSLYLNPYAWNNLANILFLDSPAGVGFSYTNKTTDLYTFGDKKTAEDAYTFLVNWFERFPQYKHRELYIAGESYAGHYVPQLAQIVYEKNKGIKNPVINFKGFMVGNAVTDDYHDYIGTFEYWWTHGLVSDSTYRMLRIACNFGSSQHPSVQCMQALRVATLEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMSRAYDPCTERYSDLYFNRPEVQKALHANVTGIPYAWKACSDIVGNYWTDSPLSMLPIYQELISAGLRIWVYSGDTDAVVPVTATRYSIDALKLPTIINWYPWYDNGKVGGWSQVYKGLTLVTVRGAGHEVPLHKPRQAFILFRSFLENKSMPSTS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01271 461 SUPERFAMILY alpha/beta-Hydrolases 30 457 IPR029058 -
Pumo3g01271 461 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Pumo3g01271 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Pumo3g01271 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Pumo3g01271 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Pumo3g01271 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Pumo3g01271 461 Pfam Serine carboxypeptidase 39 454 IPR001563 GO:0004185|GO:0006508
Pumo3g01271 461 FunFam Carboxypeptidase 360 454 - -
Pumo3g01271 461 FunFam Carboxypeptidase 29 291 - -
Pumo3g01271 461 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Pumo3g01271 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Pumo3g01271 461 Gene3D - 313 349 - -
Pumo3g01271 461 Gene3D - 360 453 - -
Pumo3g01271 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 441 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01271 Pumo-Chr3 20257962 20263179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01271 323 457 Calmodulin-binding Proteins AT2G22960 30.147 3.47e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01271 K16297 - gmx:100812000 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01271 3 20257962 20263179 Pumo3g01271 3 20257962 20263179 ECH