Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01263 ATGTGGCGTCTGCATTGTTTGATCTATGTAGCCGATTTGAAAAGTGTTTTTTTGATTTGTAAGCTCCGTGGTGTTGTTGATCTTACTTGCTTCCAAGTTCAAGGACTAATGGGTAAAGAGAAGGTTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAGTCAACCACCACCGGCCACCTCATCTATAAGCTTGGAGGTATTGACAAGCGTGTTATCGAGAGATTTGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCTTTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATTACCATTGATATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCCCCTGGACACAGGGATTTCATCAAGAATATGATTACTGGGACATCCCAAGCTGACTGTGCTGTTCTTATCATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACCCGTGAGCATGCTCTCCTTGCTTTCACACTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCCACTACACCTAAGTACTCTAAGGCAAGGTATGATGAAATTGTGAAGGAAGTTTCTTCCTACTTGAAGAAGGTCGGATACAACCCTGACAAGATACCTTTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGATGCCCTTGATCAGATCAATGAGCCCAAGAGGCCATCAGACAAGCCTCTCCGATTACCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTTGGACGTGTTGAAACTGGTGTCTTGAAACCTGGAATGGTGGTTACTTTTGCCCCAACTGGACTGACCACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCACTGAGGCCCTTCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTCGCCTCAAACTCTAAGGATGACCCTGCCAAGGAGGCTGCTAACTTCACATCCCAAGTTATCATCATGAATCACCCTGGACAGATTGGAAATGGCTATGCACCTGTTCTTGATTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAACTTGTGACCAAGATTGACAGGCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAATTCCTAAAGAATGGTGATGCTGGTTTTGTCAAGATGATTCCCACCAAGCCCATGGTGGTTGAAACCTTCTCTGAATATCCTCCACTTGGTCGTTTTGCTGTGAGAGACATGCGTCAAACTGTGGCTGTGGGAGTCATCAAGAGCGTGGAGAAGAAGGACCCCACTGGAGCTAAGGTCACCAAGGCTGCACAGAAGAAAGCCAAGTGA 1455 0.4639 MWRLHCLIYVADLKSVFLICKLRGVVDLTCFQVQGLMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAQKKAK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01263 484 Gene3D Translation factors 265 352 - -
Pumo3g01263 484 FunFam Elongation factor 1-alpha 359 466 - -
Pumo3g01263 484 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 97 112 IPR031157 -
Pumo3g01263 484 Gene3D Translation factors 359 466 - -
Pumo3g01263 484 FunFam Elongation factor 1-alpha 265 352 - -
Pumo3g01263 484 Pfam Elongation factor Tu C-terminal domain 358 465 IPR004160 -
Pumo3g01263 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 285 IPR027417 -
Pumo3g01263 484 PRINTS GTP-binding elongation factor signature 124 134 IPR000795 GO:0003924|GO:0005525
Pumo3g01263 484 PRINTS GTP-binding elongation factor signature 140 151 IPR000795 GO:0003924|GO:0005525
Pumo3g01263 484 PRINTS GTP-binding elongation factor signature 184 193 IPR000795 GO:0003924|GO:0005525
Pumo3g01263 484 PRINTS GTP-binding elongation factor signature 45 58 IPR000795 GO:0003924|GO:0005525
Pumo3g01263 484 PRINTS GTP-binding elongation factor signature 104 112 IPR000795 GO:0003924|GO:0005525
Pumo3g01263 484 NCBIfam translation elongation factor EF-1 subunit alpha 37 469 IPR004539 GO:0003746|GO:0005525|GO:0006414
Pumo3g01263 484 CDD EF1_alpha_II 266 356 - -
Pumo3g01263 484 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 41 266 IPR000795 GO:0003924|GO:0005525
Pumo3g01263 484 SUPERFAMILY Translation proteins 267 357 IPR009000 -
Pumo3g01263 484 Pfam Elongation factor Tu domain 2 284 349 IPR004161 GO:0005525
Pumo3g01263 484 CDD EF1_alpha_III 359 462 - -
Pumo3g01263 484 PANTHER TRANSLATION FACTOR 39 469 - -
Pumo3g01263 484 CDD EF1_alpha 45 263 - -
Pumo3g01263 484 Pfam Elongation factor Tu GTP binding domain 42 258 IPR000795 GO:0003924|GO:0005525
Pumo3g01263 484 FunFam Elongation factor 1-alpha 37 262 - -
Pumo3g01263 484 Hamap Elongation factor Tu [tuf]. 38 468 IPR004539 GO:0003746|GO:0005525|GO:0006414
Pumo3g01263 484 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 362 465 IPR009001 -
Pumo3g01263 484 Gene3D - 27 264 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01263 Pumo-Chr3 20187114 20189309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01263 37 476 Eukaryotic Initiation Factors Gene Family AT5G60390 96.364 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01263 K03231 - gmx:100801611 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01263 3 20187114 20189309 Pumo3g01263 3 20187114 20189309 ECH