Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01257 ATGGAGTACAAAGTGAAAACCACAACAACACCACCTTCTCAATCTCCACCAATCCCAATCCATGTTCCCACTATGCTCTCAAACTCTCCTCCATCTTCATCTTCTTCACCTCCTTCACAATCTCCCACTCCTTTCCCTTCACCCTCTCAGGGCTCTCCCTCTGCTGCTCCACCGTCTCCTCCGCCGCCGCCGCCACCGGTGGTGGTTAGCCCTTGTGCTGCCTGCAAGATCCTCCGCCGCAGGTGTGTGGAGAAGTGTGTGTTGGCTCCATATTTTCCTCCCACTGATCCTCTCAAGTTCACCATTGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAGCTGCCAGAATCTCAGAGAGCCGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCTAGGATCAGAGACCCAGTTTATGGCTGTGCAGGTGCAATATGCCAACTTCAAAAGCAAGTCAGTGAGCTACAAGCACAGCTAGCCAAAGCACAAGCTGAGCTAGTGAACATGCAGTGCCAACAAACCAATTTGGTGGCTCTAATTTGCATGGAAATGAGTCAATCACAGGAGCAGCACATGCTTCAGCCTCAACCTCACGTTGATATGAGCTGCTTCATAGAGGACAACAGTTTTGGGACTGCTTGGGAGCCTCTTTGGACATGA 675 0.5067 MEYKVKTTTTPPSQSPPIPIHVPTMLSNSPPSSSSSPPSQSPTPFPSPSQGSPSAAPPSPPPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQTNLVALICMEMSQSQEQHMLQPQPHVDMSCFIEDNSFGTAWEPLWT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01257 224 MobiDBLite consensus disorder prediction 1 65 - -
Pumo3g01257 224 MobiDBLite consensus disorder prediction 35 65 - -
Pumo3g01257 224 Coils Coil 150 177 - -
Pumo3g01257 224 ProSiteProfiles LOB domain profile. 70 171 IPR004883 -
Pumo3g01257 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 70 195 - -
Pumo3g01257 224 MobiDBLite consensus disorder prediction 20 34 - -
Pumo3g01257 224 Pfam Lateral organ boundaries (LOB) domain 71 168 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01257 Pumo-Chr3 20134181 20136242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01257 67 224 AS2 family AT1G07900 72.393 1.44e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo3g01257 LOB 2.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01257 - - gmx:100806667 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01257 3 20134181 20136242 Pumo3g01257 3 20134181 20136242 ECH