Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01246 ATGTCTGGCAACTCCAATTGCAGTGTTTACATAGGCAACCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCCGGCTTTTCTCAGGCCTTGTAACACTATACAACAGAACACTTAAGTTTGCGATATCTGGGAGAGACAAAACTACCCCTAATGGTTCTACAGCAATTACCCCCACATCAAATTCTTCTCAAAGACCAAGGCCATATCCAATGCCAATAAATAATTCAGAAAATTTTCAGCACCCTGCTAGGCTATCAACTCCTGACCGATTTTCCGATTACCCAGTAAATTATTCCCAAGTTCCTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATAGTGGCAACAATTATGAATACAGCAGGAGAGCTTTTGGGGCAACATTGGATAGCATTAGCCGATCTAGGTCACGCCGCTTTGATAGAAGTAGCCCAGTCTCTTACCCATCTTACTAA 591 0.4247 MSGNSNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLVTLYNRTLKFAISGRDKTTPNGSTAITPTSNSSQRPRPYPMPINNSENFQHPARLSTPDRFSDYPVNYSQVPPSRVTDQSSGYGSHYSGNNYEYSRRAFGATLDSISRSRSRRFDRSSPVSYPSY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01246 196 Gene3D - 2 95 IPR012677 -
Pumo3g01246 196 SMART rrm1_1 8 82 IPR000504 GO:0003723
Pumo3g01246 196 MobiDBLite consensus disorder prediction 85 126 - -
Pumo3g01246 196 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 193 - -
Pumo3g01246 196 MobiDBLite consensus disorder prediction 133 162 - -
Pumo3g01246 196 MobiDBLite consensus disorder prediction 85 162 - -
Pumo3g01246 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Pumo3g01246 196 SUPERFAMILY RNA-binding domain, RBD 4 83 IPR035979 GO:0003676
Pumo3g01246 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01246 8 87 Eukaryotic Initiation Factors Gene Family AT1G49760 31.250 2.89e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01246 K12831 - gmx:100803118 357.066