Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01241 ATGACTGACACGATTGATATGGAAGATTCAGAGGAGGATGAGCTTTTGAATCTTAGCCTTTCAGTTGCTGCTGATAGGGAAAGGAAAAAGAAGGGAAAGATAATTAGGGAACACAATAACGTTTCTATGAGTAGTAGCACTACTACTACTAGGAACTCCTATGAAAGCTATCATGAAGGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATAGGAGGAAAGGTGTTGTGGAAGATGGGAATGGCCTCCCTTTGATCCATTTGTTGCTCTCAACCGCCACTGCAGTTGATGACAACAACTTGGATTCATCCTTAGAGAATCTCACTGATTTATACCAAACTGTTTCCCTAACAGGTGACTCGGTTCAACGTGTGGTGGCCTATTTCGCTGATGGTTTGGCTGCAAGGCTTCTAACAAGGAAATCCCCATTCTATGACATGCTCATGGAGGAACCAACAACCGAGGAAGAGTTCCTTGCATTCACAGATCTCTACAGGGTTTCACCTTACTACCAATTTGCTCATTTCACAGCAAACCAAGCCATCTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGTGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTTTCAGAGAAGGCAACCAGTGGCAACCGCATATCCCTCAGGATTACCGGGTTTGGGAAGAACCTCAAGGAGCTTCAAGAAACTGAGTCTAGATTGATCTCTGACACATTGGGATTTGTTCATTCCCTTAGCCCCTCCATTGTTGTGCTGGTGGAGCAAGAAGGTAGCAGGAGTCCTAGGAGCTTCTTGTCAAGGTTCACAGACTCTTTGCACTACTTTGCAGCCATGTTTGATTCACTTGATGATTGCCTCCCACTTGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGAGGGTGGTGTGGATTGCCCAAAGTATGAGAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGGTTTGTTGCCACAAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGTCCTCTTCAGTTTGAGGAAGAGGGAGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACTGTCTCAGCATGGCAATCAGTCTGA 1269 0.4492 MTDTIDMEDSEEDELLNLSLSVAADRERKKKGKIIREHNNVSMSSSTTTTRNSYESYHEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLPLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTTEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLISDTLGFVHSLSPSIVVLVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVEGGVDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01241 422 Pfam GRAS domain family 91 255 IPR005202 -
Pumo3g01241 422 Pfam GRAS domain family 257 420 IPR005202 -
Pumo3g01241 422 Coils Coil 311 331 - -
Pumo3g01241 422 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 256 415 IPR005202 -
Pumo3g01241 422 ProSiteProfiles GRAS family profile. 82 420 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01241 Pumo-Chr3 19994684 19998892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01241 98 419 GRAS Transcription Factor Family AT3G54220 32.095 5.92e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo3g01241 GRAS 4.1e-35 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01241 - - gmx:100809458 730.709