Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01240 ATGGATCCAAGAGGAAGCTTTTGTGCTAACAACTGTACAAGGTCCTCTTCCTTAACCTCTCCTGGGAATGGATTACAAACAAATTTGTCCTCAGATCCTCCCTCTTTCTATGGGATCAGGATTGAATCACCATTCAAAGAATTCAACCCACCCTCTCCTCCAACCCAATCTGTACTTCCAGGTGAATCTAACACAGATATTGAGATCCCTGACCAAGAAAATTGTCCATTGAGTGACTCATCACATACCCGTAAACTCCAAGATTGGAATCCAAGTGCGATGTTGAATAACCTTTCCTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTGATTGTTAATAAAAAGTGCCAACCCTTTGGACAACCTCATGAACTAGTGACTCAGGAACAGCAGCTCATCACAGCCGATCTTACATCAATTATTGTTCAGTTGATCTCTACTGCTGGTAGTCTTCTTCCCTCTGTTAGGCACACACTCACAAACACTAATCCCTTGGTTGGCCAGCTTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGACCCAAGTAGTGGTATTAGGCCACAAAATAATAGTGGAAATAAACTGTTTGATCAGTCCACTCTGAATAATCTACCAAATAATTGTGAAATGGAGCAAAACCACAACATGGAAGAACATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAATCTTCCACCCGGTTCCTACGAGATTTTACAATTAGAAAAAGAAGAAATCCTAGCACCTCACACACATTTCTGTACAATATGTGGGAAGGGATTCAAGAGGGATGCGAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCTGCAGCTCTTGCAAAACCACACAAAGAAACCGGTTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTTTGCTGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACCATTTTGTGTGTCAAAAACCACTACAAGAGAACACACTGCGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTATTCCAAGGCCATACACCAGCTATTCCTTTGGATGAAACCAAAGGAGTGGCTGAGCCACCTGATATCCAGAACAGAGAAAGCAACAATAAGGTAGAAAGTATTAACTTCTGTTTTGGATCGAATCCTTCAAGTGAAAACGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTATGAATTATTTCTCATCGTTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAATGAATTCTTCCAACCTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCTTTTAACTATGCTCCTAAATTTGGTGGCGGTGAATCAAGTTCTGACAATCTGTAG 1539 0.4159 MDPRGSFCANNCTRSSSLTSPGNGLQTNLSSDPPSFYGIRIESPFKEFNPPSPPTQSVLPGESNTDIEIPDQENCPLSDSSHTRKLQDWNPSAMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTNPLVGQLDQLHGINLPFGSDPSSGIRPQNNSGNKLFDQSTLNNLPNNCEMEQNHNMEEHEPKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPFAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGVAEPPDIQNRESNNKVESINFCFGSNPSSENVVQNMMDMKGNIDDPMNYFSSLNFEGCNFGAFNEFFQPPFEDSEGSFSFLMSGSFNYAPKFGGGESSSDNL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01240 512 MobiDBLite consensus disorder prediction 187 215 - -
Pumo3g01240 512 Gene3D Classic Zinc Finger 244 317 - -
Pumo3g01240 512 MobiDBLite consensus disorder prediction 222 241 - -
Pumo3g01240 512 MobiDBLite consensus disorder prediction 184 215 - -
Pumo3g01240 512 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Pumo3g01240 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 81 483 IPR044300 GO:0010044|GO:0010447
Pumo3g01240 512 MobiDBLite consensus disorder prediction 1 66 - -
Pumo3g01240 512 SMART c2h2final6 260 282 IPR013087 -
Pumo3g01240 512 SMART c2h2final6 347 369 IPR013087 -
Pumo3g01240 512 SMART c2h2final6 309 342 IPR013087 -
Pumo3g01240 512 SUPERFAMILY beta-beta-alpha zinc fingers 258 285 IPR036236 -
Pumo3g01240 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Pumo3g01240 512 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01240 Pumo-Chr3 19977627 19980333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01240 228 510 C2H2 Transcription Factor Family AT1G34370 70.242 3.98e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01240 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01240 - - gmx:100170687 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01240 3 19977627 19980333 Pumo3g01240 3 19977627 19980333 ECH