Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01227 ATGACATTAACCCAAATTCCTGAGAGATCATCAATTGATATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCCACAGAAGAGGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTCAAAATCGATCTAGATGTTATCGTTGAGATTGATCTCTACAAAATGGAACCATGGGATATACAAGATAGGTGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTACAGGGACAAGAACTAACAGGGCCACTGCTGCTGGGTTCTGGAAAGCAACAGGAAGAGACAAGGCTGTGATGTCCAAAAATAGAATCATAGGAATGAGGAAGACCTTGGTGTTCTACAAGGGACGTGCCCCTAATGGAAGGAAAACAGATTGGATTATGCATGAATATAGGCATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCAAGGTTTTGATCCATGGTGCAGCAGTAGTCAACAACAACAACACTTTTTCAGAGATCAAAGCTATGCAAGACCCTTATCAATTGCTGACATTTTGAATGAAACAAATGTGCCTTATCATCACCCTGCTGAAGGTACAAGTTTTAGTCACCCCTTCAGCTCGGATCAGCAGCAGCAACAACACTTGAATATTCTATCAAACCAAACTGCTATTATGGACAAACAACTCATTGAGCTTCCTCAGCTAGATAGTCCCACTGCAAGTTTGGCAATGAAAGAATGTAACCAACAACACAATGGCCTAACAAATGAGGAGTATTGCAGTGATGAAAGGAGCAATAGCAGTGCACAAGGGATCGATTGGAAGAGCTTGGACAGCTTGTTTGGGTCACAATTGAGTGATAATTCAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAACCATGATCAAGCTAGTCATATCCTAGGATGCTTCCCTGATTCATAA 1017 0.4228 MTLTQIPERSSIDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGFDPWCSSSQQQQHFFRDQSYARPLSIADILNETNVPYHHPAEGTSFSHPFSSDQQQQQHLNILSNQTAIMDKQLIELPQLDSPTASLAMKECNQQHNGLTNEEYCSDERSNSSAQGIDWKSLDSLFGSQLSDNSAYFSHPNLPLMMPHNHDQASHILGCFPDS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01227 338 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Pumo3g01227 338 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Pumo3g01227 338 FunFam NAC domain-containing protein 27 171 - -
Pumo3g01227 338 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Pumo3g01227 338 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 268 - -
Pumo3g01227 338 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01227 Pumo-Chr3 19799396 19804484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01227 14 338 NAC Transcription Factor Family AT1G71930 54.572 1.18e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo3g01227 NAM 8.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01227 - - gmx:100812904 636.721